Conserved Protein Domain Family
PseudoU_synth_ScRIB2

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cd02557: PseudoU_synth_ScRIB2 
Pseudouridine synthases similar to Saccharomyces cerevisiae RIB2
Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs.
Statistics
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PSSM-Id: 211331
Aligned: 24 rows
Threshold Bit Score: 229.439
Created: 3-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
probable active
Feature 1:probable active site [active site]
Evidence:
  • Comment:D of active site is key conserved residue

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                    ####             
Q12362    146 THKVHRHEPPVTSKPIDIVFEDedILVIDKPSSIPVHPTGRYRfNTITKMLERQLgy-sVHPCNRLDKPTSGLMFLAKTP 224 baker's yeast
EAL66845  225 IHTVHRHEPPVTGESIKIVSLDenVVVVDKPSSIPVHPCGRFRhNSLMYILASEHginqLYGVHRLDRLTSGLLLLARTP 304 Dictyostelium disc...
AAN38692   93 THFLHRHEPPVMIDDVVILHQEpdVVTVCKPASVPVHPCGQYRkNTIVGILDAEHdlgtLFPIHRLDRLVSGLLIIARTA 172 thale cress
AAS54795   90 LQWPLLHNVAHNTAGLKVVFEDndLLVIDKPCGIPIHPTAYFYkNTLTEVLEDARgy-pLFPCYRLDKITSGLLIFAKTQ 168 Ashbya gossypii AT...
P53294    104 SQEVEAEDLPGRIAGFNIVFEDesILVIDKPSGIPVHPTGQFYqNTITELLKLHGv--dALPCYRLDKITSGLLILAKNS 181 baker's yeast
EAK92508   92 TKHRHEPPIPWHNDIIKSVYEDdeILVVDKPSGIPTHPTGNYYyNSLSEIIKQQLnmdsIWTCHRLDKVTSGVLVLAKTK 171 Candida albicans S...
CAG60566   99 WCSNEANIPGKKIAGIDIVYEDenLLVINKPCGIPIHPTGLYYgNTLTEILKVNGv--hALPAYRLDKVTSGLLILSKDT 176 Candida glabrata C...
EAL48250   89 ISKCHLHEPPVPIKEIQIIENTneYLVINKPSGIPVHPTGRYNqNCIINILLNEYhfshLKPVYRLDKNTSGILLFAKTK 168 Entamoeba histolyt...
CAG82596   94 VHRHEPAVPTRDEKPIRIVFENdaLVVVDKPGGIPVHPTGKYLfNSVKEILKHETgleeLYPAHRLDKNTTGVLVFAKTS 173 Yarrowia lipolytic...
CAG89871  109 LVKKSSKCTSQDLTDLSIIFENdeMLVIDKPAGIPTHPKGNYRyNSITELVKHDLnlenVWPCHRLDKVTSGILILGTTK 188 Debaryomyces hanse...
Feature 1                                                                                     
Q12362    225 LGADRMGDQMKar--------eVTKEYVARVKGEFPig-----------------------iVEVDKPVRSvnpkvalna 273 baker's yeast
EAL66845  305 DSANKKANQIQsg--------lVSKQYLAKVIGKFPgsdtinsssssfneqiklckhledgtFIIDQPIVIqsmrlgi-- 374 Dictyostelium disc...
AAN38692  173 AKADFFRQQIEgg--------mVKKRYIAKVIGVFPed-----------------------eMIVDANINYngsegrsta 221 thale cress
AAS54795  169 QTASRLQSQIRdq--------nMNKWYLARVDGNFDfn-----------------------kKTASSPIYTfepkksl-- 215 Ashbya gossypii AT...
P53294    182 QSAGEIQKSIRsr--------dMIKIYLARVKGRFPhselildnena-----aettfedtskVTVEMTPIYsidpkrq-- 246 baker's yeast
EAK92508  172 NGGVRFSKLMRdsk------qhTEKTYLARVSGKFPeg-----------------------iHRYRCPIFAvnmngylm- 221 Candida albicans S...
CAG60566  177 GTASMVQKKIRsh--------eMQKWYLARVEGAFPhvnevph-------------ietleiQRLDLPIEEqiiqdnsil 235 Candida glabrata C...
EAL48250  169 TFASSFQSILKekssvisstssLQKIYLARVVGYFPd------------------------tIEVNLPLHLvrfgtes-- 222 Entamoeba histolyt...
CAG82596  174 ESVNHVTQQIMsr--------sAKKEYLARVKGRFPpg-----------------------rVETHHPVVEntik----- 217 Yarrowia lipolytic...
CAG89871  189 QGSKIYLTIINner------drISKQYVARVMGEFPkd-----------------------eFVMNCPIFLvntsggyi- 238 Debaryomyces hanse...
Feature 1                                                             #                       
Q12362    274 --------------vcemsdenAKHAKTVFQRVSYdg--qtSIVKCKPLTGRTHQIRVHLQYLGFPIANDPIYSNpdiwg 337 baker's yeast
EAL66845  375 ----------------nhvgvgGKPSITHIKLFSYdqstntSIVLCTPKTGRTHQIRVHLKWLGFPIANDPLYNNefkes 438 Dictyostelium disc...
AAN38692  222 ed---------anssgddkkvkGKPACTKFTRIDTng--thSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNqhidn 290 thale cress
AAS54795  216 ----------------kgafapVRDALTEFYHVAYneelnqSLVLCKPLTGRTHQIRIHLARLGHPIVNDPFYNVknsky 279 Ashbya gossypii AT...
P53294    247 ---------------fpvglstSKDAITKFYPIRYfshadeTVVACKPITGRTHQIRIHLARLGHPIVNDSVYCShitky 311 baker's yeast
EAK92508  222 ---------------sgnmeelPTDSTTIFERIKYnasldqSLVKCVPITGKFHQIRIHLRNLGFPIVNDSFYQPeqdql 286 Candida albicans S...
CAG60566  236 tiedsdvytvepkkqypsglsvPRSAKTIFYPIKYfphkneSIVACRPITGRTHQIRIHLARLNHPIVNDTIYSQkitry 315 Candida glabrata C...
EAL48250  223 ---------------qscicedGIEARSSFKRLFFdkdsntSVIECVPHTGRTHQLRLHLKAIHHPIANDSAYLLnqihn 287 Entamoeba histolyt...
CAG82596  218 ------------------rnvqPKDAHTAFERVAYdehrdlSIVRCLPSTGRNHQIRQHLLHLGYPIENDREYNPelagv 279 Yarrowia lipolytic...
CAG89871  239 --------------mpsnsrnvPKNSTTIFRRLNYnkelnqSIVLCKPITGRMHQIRIHLRNTGHPIVNDYEYNPqgdat 304 Debaryomyces hanse...
Feature 1                                                                                     
Q12362    338 pdlgrgglqnyddivlkldaigktnpae------------------------------------swihphsegeyllgrq 381 baker's yeast
EAL66845  439 fkaltsdgktsyifddddgggennekdekinnnnnn-------------------slsqkiinkvtkeeedfiddgvspi 499 Dictyostelium disc...
AAN38692  291 letyiakridagerkivspddyv----------------------------------------------yssedfsidpm 324 thale cress
AAS54795  280 pkrsafmlevedwntieqdklshlfdef-----------------------------------iveidenwrglnpagdl 324 Ashbya gossypii AT...
P53294    312 perlkfitqfprwenqqdldaeelkvrf-----------------------------------qkfvdetknncrtmetf 356 baker's yeast
EAK92508  287 tiqkcniekqlynklftkypqfenfeatdgavvdshinlldi-------idwyndkelkdmlldlkagqvekltlqksti 359 Candida albicans S...
CAG60566  316 perlnfirsianwseakltdeelsetfqifi------------------------------qesehfkkkalaenkncpv 365 Candida glabrata C...
EAL48250  288 yrqqdgeinrenkwrak----------------------------------------------------------ygwvf 309 Entamoeba histolyt...
CAG82596  280 krrkkveeg----------------------------------------------------------------------- 288 Yarrowia lipolytic...
CAG89871  305 rlhiqrlrnqielqmyeniyldfpsfkehqphnvahdetevdvvrlsrvetdemqkkihqlvklrsemvkdmkeqynkic 384 Debaryomyces hanse...
Feature 1                                                        
Q12362    382 ceeceaemytdpgtndLDLWLHAFRYESLernsdtqkpLWSYRTKYPEWAL 432 baker's yeast
EAL66845  500 hcndcsivwsdstqfsFGIYLHALSYSSN---------DWSYKTDLPNWAK 541 Dictyostelium discoideum
AAN38692  325 ctncpklipqgyeehdEALWLHCVQYCGT---------GWEYECPYPSWAS 366 thale cress
AAS54795  325 ceecgeelprdpekheLILYLHAWKYNGS---------DISFTTEYPEWAS 366 Ashbya gossypii ATCC 10895
P53294    357 cpechtvdlkdpvlsdLELWLHAWKYEEIn-------gKFKFKTDLPKWAQ 400 baker's yeast
EAK92508  360 cseckrslidteyksnSMVWLHALSFKYE---------NYHFETDYPDWAD 401 Candida albicans SC5314
CAG60566  366 csecgaltlsdpdpedLSIDLHAWRYSDAe-------kTLNFKTELPQWVV 409 Candida glabrata CBS138
EAL48250  310 dkdckdcnfpkgdpieEQIWLHAWKYSFN---------SHDWIAEIPEWAE 351 Entamoeba histolytica HM-1:IMSS
CAG82596  289 --vcdqcglpiyqdyhDELYLHAQKYTLE---------EGVFETEVPEWAE 328 Yarrowia lipolytica CLIB99
CAG89871  385 decnrplfdsdiniddGGIWLHAFRYEYSaie---svnSFCFETSFPSWCN 432 Debaryomyces hansenii CBS767

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