1L5Z,1L5Y,1QKK


Conserved Protein Domain Family
REC_DctD-like

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cd17549: REC_DctD-like 
Click on image for an interactive view with Cn3D
phosphoacceptor receiver (REC) domain of C4-dicarboxylic acid transport protein D (DctD) and similar proteins
C4-dicarboxylic acid transport protein D (DctD) is part of the two-component regulatory system DctB/DctD, which regulates C4-dicarboxylate transport via regulation of expression of the dctPQM operon and dctA. It is an activator of sigma(54)-RNA polymerase holoenzyme that uses the energy released from ATP hydrolysis to stimulate the isomerization of a closed promoter complex to an open complex capable of initiating transcription. DctD is a member of the NtrC family, characterized by a domain architecture containing an N-terminal REC domain, followed by a central sigma-54 interaction/ATPase domain, and a C-terminal DNA binding domain. The ability of the central domain to hydrolyze ATP and thus to interact effectively with a complex of RNA polymerase, sigma54, and promoter, is controlled by the phosphorylation status of the REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.
Statistics
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PSSM-Id: 381101
Aligned: 55 rows
Threshold Bit Score: 186.927
Created: 9-Nov-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[ED] [ED] [ED]Click to see conserved feature residue pattern help
Evidence:
  • Structure:1L5Y: Sinorhizobium meliloti DctD REC domain binds Mg2+
  • Comment:also based on metal binding site of other family members
  • Comment:signal transduction in two-component systems is mediated by metal ion dependent phosphorelay reactions between protein histidine kinases and phosphoaccepting receiver domains in response regulator proteins
  • Comment:for many receivers, Mg2+ is the preferred metal ion, but other divalent ions such as Mn2+ are also used

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ##                                          #                               
1L5Z_A         6 VFLIDDDRDLRKAMQQTLELAgFTVSSFASATEALAGLsaDFAGIVISDIRMPGmdGLALFRKILALDpDLPMILVTGHG 85  Sinorhizobium m...
1L5Y_A         6 VFLIDDDRDLRKAMQQTLELAgFTVSSFASATEALAGLsaDFAGIVISDIRMPGmdGLALFRKILALDpDLPMILVTGHG 85  Sinorhizobium m...
WP_091965006   9 VLLVDDDPAVLEATRQWLELSdIQVLTFDDPLIAEEHLdaDFPGILVSDIRMPGisGIQLMAQVQEKVpGLPIILITGHG 88  Marinospirillum...
PZP19071       7 VAIVDDEPDMRESISQWLSLSgFRTETFPSAEDALKAIgpDWPGVVISDIRMPGmdGMAFLKRLMGQDsGLPVIMITGHG 86  Kocuria rhizophila
PRD39930       7 IAIVDDEADMRQSISQWLALSgFDTETYGSAEDALAAItgDFPGVIVSDIRMPGmdGMAFLKRLMGMDsALPVIMITGHG 86  Nephila clavipes
WP_043763701  11 VLLVDDDEDVLESYCHLLRLSgYQPRATTSPHEALELLasQWPGVVVSDIYMPAmnGMELLTRVHEIDaEIPVIMITGHG 90  Aeromonas taiwa...
WP_014991885   7 VLLIDDDQDVLQAYQSLLELEgYRTIAVNNPVTALEQIseDWQGIVVSDIYMPQmsGWQLLEQIHAKDkQLPVILITGHG 86  Actinobacillus ...
GAA04798       7 VLIVDDDQDVLDAYQELLELAgYNVQTVTDSTQVIAMLdyHWAGVIVTDMYMPGlnGMELLEKIQHFDnDIPVIIVTGHG 86  Photobacterium ...
WP_088739264   8 VLLVDDDADVRESAQKLLNLAgLPCLTRADAASALADLppDWPGVIISDVCMPGmdGEALLAALRQRDeQLPVILITGHG 87  Xenophilus sp. ...
PCH72424      13 VLFVDDDRAMVNSTVQWLKLSgIQVRAFSEPLALLRTIkpDMPIVVISDIRMPEmdGIELLAQIKNKDeGIPVILITGHG 92  Rhizobiales bac...
Feature 1                                                          
1L5Z_A        86 DIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRRLVMENRSLRRAA 135 Sinorhizobium meliloti
1L5Y_A        86 DIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRRLVMENRSLRRAA 135 Sinorhizobium meliloti
WP_091965006  89 DIPMAVEAIRNGAWDFLEKPFDPERLEEIIRKALITRSLQLENNRLRAAM 138 Marinospirillum celere
PZP19071      87 DVPMAVEAMRLGAMDFMEKPFNPDRMTELAKKATLARRITLDNRALRRDL 136 Kocuria rhizophila
PRD39930      87 DVPMAVEAMRLGAFDFLEKPFNPDRMTELAKRATQARRMTLDNRALRKEL 136 Nephila clavipes
WP_043763701  91 DIPLAVKAVKQGAFDFLEKPLNPQALLGLLERACKQRSEVLARRNEIQET 140 Aeromonas taiwanensis
WP_014991885  87 DVPMAIEAMQKGAFYFIEKPVRPEKFLQQVAQACEQRQTQLATKLWQQSE 136 Actinobacillus suis
GAA04798      87 DIPMAVDALKKGAIDFLQKPLQPNDLIQLLEKHLPLRKQIIEQRKTLQST 136 Photobacterium leiognathi subsp. mandapamensi...
WP_088739264  88 NIPMAVRAVRAGAFEFLEKPVSPPQLIDCARRALAQRREAIANRQFHKHE 137 Xenophilus sp. AP218F
PCH72424      93 DVPLAVEAMKAGAFEFLTKPFSPDQLLDYVKQAQASRVTQLGAKQENNQI 142 Rhizobiales bacterium

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