Conserved Protein Domain Family
PLDc_N_DEXD_b1

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cd09203: PLDc_N_DEXD_b1 
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain.
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.
Statistics
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PSSM-Id: 197297
Aligned: 22 rows
Threshold Bit Score: 240.22
Created: 14-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic siteputative
Feature 1:putative active site [active site]
Evidence:
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
NP_716008      65 LSLESELKREIrSSDKIYWLVSFIKWAGIRIFKHELEEFtrs--------gkELRIITTSYMGATDAKAVEFLaclPNTQ 136  Shewanella on...
YP_001838161  135 PPLNHELRMELaTADKVDILVSFIKWSGLRLLFPSFQILadn--------niPVRIITTSYMGVSEPEALQKLaefKNVT 206  Leptospira bi...
ZP_01042524   133 PGLLNELQAELsHCNHVDILMSFITMSGIRKIINILKEItavdae--qrsqtSIRIITTTYIGATEQSAVDMLaqlPNCQ 210  Idiomarina ba...
EAY57993      137 PSLASELDKEIrSADRIDILMSFIKWSGLRILRSALLDAtdr-------gtvPVRVLTTTYLGATEIACLDFLsslPGAE 209  Leptospirillu...
NP_869958     171 ASLGSQLRKEIsTCDRVDILCSFIKWSGLRVIVDELRELvdrn------delAVRVITTSYMGATDPKAVAALselPGTE 244  Rhodopirellul...
ACB36539      138 PSLLQEIRRELaSSDQVDILVSFITVSGVRKLQDVLQQItakggngqgqagtRLRILTTTYTGATEARALDELarlPGCE 217  Leptothrix ch...
ZP_03924907   137 PSLEQELTSEFdSADQVDAVIAFIRASSMHTLYQQFQKLrdr--------giPVRIITSTYTGSTERRVLDKLvreYGVQ 208  Actinomyces c...
ZP_01872806   133 PSLQSQLKKELrTCDRADLLVSFIKWSGLRPILDVLKDFcsvan---ddgtpRLRVATTSYMGATDVKAIEALlelPNTE 209  Lentisphaera ...
YP_374734     158 PALRTQLIKELsSCDKADWLVSFIRYAGILPLLPALKAFtstpa---pdgepKLRIATTTYMGATEVKAIEALlalPNTE 234  Pelodictyon l...
ACL67331      131 PRLGAEIAAEIdSADSVDMLVSFIKWHGWRRLRSAFEVFarv--------gkRLRVLTTTYMGATDREALDAIarlPGAE 202  Anaeromyxobac...
Feature 1                     # #                # #          #                          
NP_716008     137 VKLSYNtkrERLHAKSYLFLRNTGFhTGYIGSSNLSHSALTSGLEWNLKITtqeiPHIIDKSLSTFETYWE 207  Shewanella oneidensis ...
YP_001838161  207 IRVSYDpdkTRLHAKAYHFHRNSGFsTAYIGSANMTHAAMTEGLEWTVKVTaqdmPHILERFTAEFETYWE 277  Leptospira biflexa ser...
ZP_01042524   211 VKVSLDgrrTRLHAKAWIFERDTGFgSAYVGSANLSKAALMGGLEWTVKFTeqgqKQLYQRARAHFETLWQ 281  Idiomarina baltica OS145
EAY57993      210 VRISFDehrTRLHAKAWLFERKSGFsTAYVGSSNISNPALTSGLEWNLKVTeedqPGVLEKIRGTFETYWN 280  Leptospirillum sp. Gro...
NP_869958     245 VRVSYDtkrTRLHAKAYLFHRKTGFsSAYVGSANLSNAALSEGLEWTTKISqyelPYLWDKVTGTFETYWQ 315  Rhodopirellula baltica...
ACB36539      218 VRVSLDgrrTRLHAKAWLFQRKTGFgSAYVGSANLSGAALTGGLEWTVKLTqraqEALFARAVAHFETLWA 288  Leptothrix cholodnii SP-6
ZP_03924907   209 VKVSYNserTRLHAKSWLIHRKTGFsTAYIGSSNLSKAAMQSGAEWNVRLTeanvPEVFSKFRSMFDSYWN 279  Actinomyces coleocanis...
ZP_01872806   210 VRISYDtkrTRLHAKAYIFHRKTGFgSAYIGSANVSKAALDEGLEWTAKISqyelEYLWKQTLASFESHWE 280  Lentisphaera araneosa ...
YP_374734     235 VRISYDtrrTRLHAKAYIFRRNSRFgSAYIGSANISKAALDEGLEWTAKISqyetAHLWEHAIATFESHWE 305  Pelodictyon luteolum D...
ACL67331      203 VRVSFDarrTRLHAKAWLFQRATGFsSVYVGSANVSSAALSDGIEWNLKASevesRAIVEKFRGAFASLWE 273  Anaeromyxobacter dehal...

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