3RFZ


Conserved Protein Domain Family
Usher

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pfam00577: Usher 
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Outer membrane usher protein
In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.
Statistics
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PSSM-Id: 425762
Aligned: 17 rows
Threshold Bit Score: 549.598
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3RFZ_E   163 YLNLQSGLNIGAWRLRDNT--TWSYNSSDrssg------sknkWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFR 234 Escherichia coli
P77196   196 SGNGTVGVNLGPWRMRADWqtNYQHTRSNddddefggddtqkkWEWSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYV 275 Escherichia coli K-12
AAL19160 196 sGNGTVGANLGAWRLRADWqaNYRHENDSedkdnfg-ssseqnWDWNRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYV 274
P75750   179 NAYGTAGINAGAWRLRSDYqlNKTDSEDNhd----------qsGGISRTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYT 248 Escherichia coli K-12
P76655   180 SSYGQAGVNLGAWRLRTDY--QYDQSFNNgksq-------atnLDFPRIYLFRPIPAMNAKLTIGQYDTESSIFDSFHFS 250 Escherichia coli K-12
P37868   177 YANADLMVNLGRWVLASNMsaSRYADGSg-------------eFTARDITLSTAISQVQGDLLLGKSQTRSALFSDFGFY 243 Salmonella enterica...
P26949   186 YAQLQPGLNIGAWRFRSST--SWWKQQG---------------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIK 248 Yersinia pestis
P31527   190 YIQLYPGLNLGAWRVRNAT--NWSQSGDRgg-----------kWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFR 256 Yersinia pestis
P33410   198 DLNLYSGFNFKGWYLRNSStlGWGQGRFT--------------RRSQRTSLQTDIPSWRARLVFGDVFSSGEYFAPYSMR 263 Bordetella pertussi...
P33341   177 YVRFNSGLNLLGWQLHSDA--SFSKTNNNpg-----------vWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFR 243 Escherichia coli K-12
3RFZ_E   235 GAQLASDDNMLPdSqrGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFT 314 Escherichia coli
P77196   276 GGSVSTDDQMLPpNlrGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVS-GTLHIRIEEQNGQVQEYD 354 Escherichia coli K-12
AAL19160 275 GGSLITDDQMLPpNlrGYAPDISGVARTNAKVTVTQRGRVIYESQVPAGPFRIQDINETVS-GDLHVKIEEQSGQVQEYD 353
P75750   249 GAALASDDRMLPwElrGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQ-GTLDVKVTEEDGRVNNFQ 327 Escherichia coli K-12
P76655   251 GISLKSDENMLPpDlrGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQ-GQLDVKVEEEDGRVTQWQ 329 Escherichia coli K-12
P37868   244 GAALRSNSNMLPwEarGYAPLITGVANSTSRVTISQNGYAVYSKVVPPGPYQLDDVRSVGN-GDLVVTVEDASGHKTTTV 322 Salmonella enterica...
P26949   249 GIKIASDESMVPyYqwNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGGSGELKVIIHESDGTKQVFT 328 Yersinia pestis
P31527   257 GVMLGDDPNMQPsNqrDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQAFI 336 Yersinia pestis
P33410   264 GMLVGSDTAMLPySerLYRPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTEANGAVQTFT 343 Bordetella pertussi...
P33341   244 GVRLFRDMQMLPnSkqNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYL 323 Escherichia coli K-12
3RFZ_E   315 VPySSVPLLQREGHTRYSITAGEYRSGn------aQQEKPRFFQSTLLHGLPAGWTIYGGTQLAD-RYRAFNFGIGKNMg 387 Escherichia coli
P77196   355 IStASMPYLTRPGQVRYKIMMGRPQEWg------hHVEGGFFSGAEASWGIANGWSLYGGALGDE-NYQSAALGVGRDLs 427 Escherichia coli K-12
AAL19160 354 VStASIPFLTRPGQVRYKLAAGRPQDWd------hNMEGGFFTSAEASWGIANGWSLYGGAIGEQ-DYQALALGLGRDLa 426
P75750   328 VSaASTPFLTRQGQVRYKLAAGQPRPSms-----hQTENETFFSNEVSWGMLSNTSLYGGLLISDdDYHSAAMGIGQNMl 402 Escherichia coli K-12
P76655   330 VAsNSIPYLTRKGQIRYTTAMGKPTSVgg-----dSLQQPFFWTGEFSWGWLNNVSLYGGSVLTNrDYQSLAAGVGFNLn 404 Escherichia coli K-12
P37868   323 YPvTTLPTLLRPGEVEYNVAVGRKSSNyklkkpfaDGENGMFWMGSVGYGFD-STTLNAASILHG-KYQAGGVSVTQALg 400 Salmonella enterica...
P26949   329 VPyDTPAVALRKGYFEYSMMGGEYRPAn------dLTQTSYVGALGMKYGLPRNLTLYGGLQGSQ-NYHAAALGIGAMLg 401 Yersinia pestis
P31527   337 VPyEVPAIALRKGHLRYNLVAGQYRPAn------aDVETPPVAQATVAYGLPWNLTAFIGEQWSR-HYQATSAGLGGLLg 409 Yersinia pestis
P33410   344 VPyASAVRLILPGQTQWSFSAGRYRNYrn-----dGQDRPWVTQLTGRHGVADGVNLYGGLLIAQ-AYQAGLAGLSWNTp 417 Bordetella pertussi...
P33341   324 VPyAAVPNMLQPGVSKYDLAAGRSHIEg-------ASKQSDFVQAGYQYGFNNLLTLYGGSMVAN-NYYAFTLGAGWNTr 395 Escherichia coli K-12
3RFZ_E   388 aLGALSVDMTQANSTLPDDs-----QHDGQSVRFLYNKSLNesGTNIQLVGYRYSTSGYFNFADTTYSRmngynietqdg 462 Escherichia coli
P77196   428 tFGAVAFDVTHSHTKLDKDtaygkgSLDGNSFRVSYSKDFDqlNSRVTFAGYRFSEENFMTMSEYLDASdse-------- 499 Escherichia coli K-12
AAL19160 427 lLGAFSVDVTHSRATLPEGsaygdgTIQGNSFRASYAKDFDdiDSRLTFAGYRFSEENYMTMDEFIDTHndd-------- 498
P75750   403 wLGALSFDVTWASSHFDTQq-----DERGLSYRFNYSKQVDatNSTISLAAYRFSDRHFHSYANYLDHKy---------- 467 Escherichia coli K-12
P76655   405 sLGSLSFDVTRSDAQLHNQd-----KETGYSYRANYSKRFEstGSQLTFAGYRFSDKNFVTMNEYINDTn---------- 469 Escherichia coli K-12
P37868   401 gFGAVSAGMNLSQAKYDNGd-----NKRGHSVSAKYAKSFSd-SSDLQLLAYRYQSKGYVEFADFYSTDr---------- 464 Salmonella enterica...
P26949   402 dFGAISTDVTQADSQKNKQk-----KESGQRWRVRYNKYLQs-GTSLNIASEEYATEGFNKLADTLNTYckpnt------ 469 Yersinia pestis
P31527   410 eYGALSSSITQATSQYHHQq-----PVKGQAWEVRYNKTLQasDTSFSLVNSQYSTNGFSTLSDVLQSYrqsgsgdn--- 481 Yersinia pestis
P33410   418 -WGAMAADATLSRSQLSTTg-----NANGSSLRFSYSKTLSgtNTAIRLATLRYSSSGFWNFADAVNAGpvetngrn--- 488 Bordetella pertussi...
P33341   396 -IGAISVDATKSHSKQDNGd-----VFDGQSYQIAYNKFVSqtSTRFGLAAWRYSSRDYRTFNDHVWANnkdnyrrden- 468 Escherichia coli K-12
3RFZ_E   463 viqvkpkftdyynLAYNKR--GKLQLTVTQQL-GRts-tLYLSGSHQTYW-GTSNVDEQFQAGLNTAFED-INWTLSYSL 536 Escherichia coli
P77196   500 -----------mvRTGNDK--EMYTATYNQNFrDAgv-sVYLNYTRHTYWdREEQTNYNIMLSHYFNMGSiRNMSVSLTG 565 Escherichia coli K-12
AAL19160 499 -----------ndRQRTGHdkEMYTLTYSQNF-SAinvnAYINYTHRTYWnQPNQDSYNLTLSHYFDVGEvRGISLSVNG 566
P75750   468 ------------nDSDAQDekQTISLSVGQPItPLnl-nLYANLLHQTWWnADASTTANITAGFNVDIGDwRDISISTSF 534 Escherichia coli K-12
P76655   470 ------------hYTNYQNekESYIVTFNQYL-ESlrlnTYVSLARNTYWdASSNVNYSLSLSRDFDIGPlKNVSTSLTF 536 Escherichia coli K-12
P37868   465 ------------yTRYNTK--SRYEMRFSQRL-GNs--nLNLAGWQEDYW-WMKGKAIGGDVSLSTTILDgVSVFLNGSY 526 Salmonella enterica...
P26949   470 ---------rndcRFDYAKpkNKVQFNLSQSIpGSg--tLNFSGYRKNYW-RDSRSTTSFSVGYNHFFRNgMSLTLNLSK 537 Yersinia pestis
P31527   482 -----rdkidensRSRDLR--NQISAVIGQSL-GKfg-yLNLNWSRQVYR-GPIPAKNSLGIHYNLNVGN-SFWALSWVQ 550 Yersinia pestis
P33410   489 ------grfglysLLGRERprGDFSVTLSQPL-GGyg-sLYVSALRRTYW-GSSRVDQQTQLGYSTQVGR-VGVNLDVSR 558 Bordetella pertussi...
P33341   469 ---dvydiadyyqNDFGRK--NSFSANMSQSLpEGwg-sVSLSTLWRDYW-GRSGSSKDYQLSYSNNLRR-ISYTLAASQ 540 Escherichia coli K-12
3RFZ_E   537 TKNAWQKGR---DQMLALNVNIPFSHwlRsdsksqwrhaSASYSMSHDLNGRMTNLAGVYGTLLedNNLSYSVQTGYAGG 613 Escherichia coli
P77196   566 YRYEYDNRA---DKGMYISLSMPWGD-------------NSTVSYNGNYGSGTDSSQVGYFSRVd-DATHYQLNIGTSD- 627 Escherichia coli K-12
AAL19160 567 FRNEYDNER---DDGVYVSLSIPWGN-------------NRTLSYNGSFSDDNNSNQVGYYERId-DRNNYQINAGRADN 629
P75750   535 NTTHYEDKDr--DNQIYLSISLPFGN-------------GGRVGYDMQNSSHSTIHRMSWNDTLd-ERNSWGMSAGLQSD 598 Escherichia coli K-12
P76655   537 SRINWEEDN---QDQLYLNISIPWGT--Sr---------TLSYGMQRNQDNEI-SHTASWYDSSd-RNNSWSVSASGDND 600 Escherichia coli K-12
P37868   527 SKRPYLDKP---DYSTSLSFSIPFTLggVr--------hYSSTGLSYSSSGRMGMNSGVSASPT--DRLSYGLNTNLSDK 593 Salmonella enterica...
P26949   538 TQNINKYGEktsELLSNIWLSFPLSRwlGnn------siNSNYQMTSDSHGNTTHEVGVYGEAFd-RQLYWDVRERFNEK 610 Yersinia pestis
P31527   551 NANENKN-----DRILSLSVSIPLGGhhDt---------YASYRMTSSNGSND-HEIGMYGQAFd-SRLSWSVRQAEHYG 614 Yersinia pestis
P33410   559 TENRRST-----EHQVMLNLSIPLYGatSs--------gVVTGSLARTGSAPVQQSVNYSGMSGerDQYTYGLGVQRAGT 625 Bordetella pertussi...
P33341   541 AYDENHHE----EKRFNIFISIPFDWgdDvstp--rrqiYMSNSTTFDDQGFASNNTGLSGTVGsrDQFNYGVNLSHQHQ 614 Escherichia coli K-12
3RFZ_E   614 GDGNsgstGYATLNYRGGYGNANIGYSHSDD-IKQLYYGVSGGVLAHAN-GVTLGQPLN--DTVVLVKAPGAKDAKVENQ 689 Escherichia coli
P77196   628 -KHTs---VDGYYSHDGSLAQVDLSANYHEGqYTSAGLSLQGGATLTTH-GGALHRTQNmgGTRLLIDADGVADVPVEGN 702 Escherichia coli K-12
AAL19160 630 GAT-----LDGYYRYQASYADIDVSANYQEGdYTSGGLNIQGGATLTAK-GGALHRTSVngGSRLLVDVGDEANVPISGY 703
P75750   599 RPDNga-qVSGNYQHLSSAGEWDISGTYAASdYSSVSSSWSGSFTATQY-GAAFHRRSStnEPRLMVSTDGVADIPVQGN 676 Escherichia coli K-12
P76655   601 EFKDmkasLRASYQHNTENGRLYLSGTSQRDsYYSLNASWNGSFTATRH-GAAFHDYSGsaDSRFMIDADGTEDIPLNNK 679 Escherichia coli K-12
P37868   594 GDRS----LSGNLSYGFDAIQTNMMLSQGRD-NTTVSGSVSGTILGTADsGLMMTKETG--NTLGVARIPGVKGVRING- 665 Salmonella enterica...
P26949   611 GRKYt--sNALNLNYRGTYGEISGNYSYDQT-QSQLGIGVNGNMVITQY-GITAGQKTG--DTIALVQAPDISGASVGYW 684 Yersinia pestis
P31527   615 QPNSghnsGSLRLGWQGSYGNIAGNYYYTPS-IRQLSADVSGGAIIHRH-GLTLGPQIN--GTSVLVEVPGVGGVTTTED 690 Yersinia pestis
P33410   626 SAQY-----ALNGSWSGTYGEVSGQLTHGRS-YSQYQINGSGGLVAHAG-GVTFGQYQA--GTIGLIQAEAAAGAKVVNT 696 Bordetella pertussi...
P33341   615 GNETt---AGANLTWNAPVATVNGSYSQSST-YRQAGASVSGGIVAWSG-GVNLANRLS--ETFAVMNAPGIKDAYVNGQ 687 Escherichia coli K-12
3RFZ_E   690 T-GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEF 745 Escherichia coli
P77196   703 gaAVYTNMFGKAVVSDVNNYYRNQAYIDLNKLPENAEATQSVVQATLTEGAIGYRKF 759 Escherichia coli K-12
AAL19160 704 StPVYTNAFGKAVIVDVNDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRm 760
P75750   677 --LDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSL 731 Escherichia coli K-12
P76655   680 --RAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVITTTLTEGAIGYAKL 734 Escherichia coli K-12
P37868   666 --SAPTNSKGYTVVNLS-DYSLNRVSVDMENVPDDLELQTTSFNVVPTEKAVVYREF 719 Salmonella enterica subsp. enterica serova...
P26949   685 P-GMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNNIVSVIPTKGAVVLAKF 740 Yersinia pestis
P31527   691 R-RLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAKTDTKVLPTEGAIVRASF 746 Yersinia pestis
P33410   697 R-NAAVDRSGYGLVSLT-PYSLNEVELSPQDLPLDVQLESTVEQVIPRAGAVVALRF 751 Bordetella pertussis Tohama I
P33341   688 K-YRTTNRNGVVIYDGMTPYRENHLMLDVSQSDSEAELRGNRKIAAPYRGAVVLVNF 743 Escherichia coli K-12
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