2ODG


Conserved Protein Domain Family
LEM_emerin

?
cd12939: LEM_emerin 
Click on image for an interactive view with Cn3D
LEM (Lap2/Emerin/Man1) domain found in emerin
This CD corresponds to the LEM domain that is critical for binding to lamin A/C and is also involved in interaction with the DNA binding protein barrier-to-autointegration factor (BAF). Emerin is an inner nuclear membrane protein that occurs in four differently phosphorylated forms and plays a role in cell cycle-dependent events. It is absent from the inner nuclear membrane in most patients with X-linked muscular dystrophy. Emerin interacts with A-type and B-type lamins. It contains an N-terminal LEM domain followed by a poly-serine segment, a region rich in hydrophobic amino acids comprising the nuclear localization signal (NLS) followed by another poly-serine segment, and a C-terminal transmembrane region.
Statistics
?
PSSM-Id: 240586
Aligned: 7 rows
Threshold Bit Score: 72.4433
Created: 15-Feb-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
polypeptide
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Structure:2ODG; Homo sapiens emerin binds barrier-to-autointegration factor (BAF) through its LEM-domain, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             ##           ###### ##  ## ##         
2ODG_C         4 YADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRR 46  human
XP_003216954   4 YKGLTDNELIARLKKYNISHGPLVGTTRKLYEKKVYEYEKERK 46  green anole
NP_001089080   4 YKHMTDDELIETLQKCNITHGPIVGTTRTLYEKKLYEYERSKT 46  African clawed frog
ACO51664       4 FKNLSDAELIKVLREYGINHGPILDSTRTVYEKKLVEFERKKK 46  bullfrog
CAQ14406       4 LSSKSNEDIRLMLDDYGIKHGPVVDSTRALYEKKLREAIAKSK 46  zebrafish
CBY34599     100 PADLTNDDIIKVLRFYGIRHGPVNPQTRKVYHKKIREAQGESQ 142 Oikopleura dioica
XP_003454303 107 LSEKSDEELGNLLSQYGIKHGPIVGSTRHLYESKLGKAMEQAS 149 Nile tilapia

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap