2C9E,1PPR,2C9E


Conserved Protein Domain Family
PCP
?
pfam02429: PCP 
Click on image for an interactive view with Cn3D
Peridinin-chlorophyll A binding protein
Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.
Links
?
Statistics
?
PSSM-Id: 426770
Aligned: 9 rows
Threshold Bit Score: 156.507
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
2C9E_A 174 DGpVGRAAKKFSEATYPIMDKLDWGKSpeisKYIETASAK-NPKMMADGIDKTLEVALTMNQNAINDAVFAHVRAIkGAL 252 Amphidinium carterae
Q2TLN0 219 DN-IGVAAKALSEQSYPFLKDINWLSD----IYLKPLPGA-SADKALKAIDKMIVMGAAADGNALKAAAAAHHTAI-GSI 291 Alexandrium tamarense
O00941 224 DA-IGEAAKKLSEQSYPFLKDINWLSD----IYLKPLPDA-TISKKAIAIDKMIMMGAKADGNLLKAAAQAHHQAI-GSI 296 Lingulodinium polyedra
1PPR_M 164 DK-IGVAAQQLSEASYPFLKEIDWLSD----VYMKPLPGV-SAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAI-GSI 236 Amphidinium carterae
Q9FEY4  52 DK-IDDAAKKLSEASYPFLKEIDWSSD----VYGK-LPTA-NPFQVLKAVDKMIVMGAAMDSAALKAGAEAHHKAI-GSI 123 Heterocapsa pygmaea
Q8H1J5  55 DK-IDDAAKVLSEKSYPFLKEIDRTSD----VYGK-LPTQ-PPLKVMTAIDTMLKMGAAMDPAAPKTGVLAHSQAI-ANM 126 Symbiodinium pilosum
Q8H1I8  53 DE-IGDAAKKLGDASYSFAKEVDWNNG----IFLQ-APGKfQPLKALKAIDKMIEMGAAADPMLLKEAAEAHHKAT-GSI 125 Symbiodinium kawagutii
2C9E_A   1 DA-IADASKRFSDATYPIAEKFDWGGSsaiaKYIADASAG-NPRQAALAVEKLLEVGLTMDPKLVRAAVEAHSKALdSAK 78  Amphidinium carterae
Q8GTH7 118 DK-IGTAAKALSDASYSFIKDIDWLSD----VYLKPLPGK-TAPETLKAIDKMIVMGSKMDGNLLKAAAEAHHKAI-GSI 190 Symbiodinium sp. JRR-35

2C9E_A 253 NtPGLVAERDDFARVNLALAKMIATADPAKFKALLTAFPGN---ADLQMALFAANNPEQAKAAYETFVALTSAV 323 Amphidinium carterae
Q2TLN0 292 D-AKGVTSAADYEAVNAALGRVIASVPKSMVMDVYNAFAGLv-sPTIPNNMFQSVNALDANAAAKAFYTFKDVV 363 Alexandrium tamarense
O00941 297 D-ANGVTSLADYSAVNAALGRVVASVPKKMVMDVYNSMASLv-aPTVPNNMFASVNPLDANAAAKAFYTFKDVV 368 Lingulodinium polyedra
1PPR_M 237 D-ATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGVt-dTSIPLNMFSKVNPLDANAAAKAFYTFKDVV 308 Amphidinium carterae
Q9FEY4 124 D-AKGVTTLADYEAVNAAIGHMVASAGESKTMDVYNVFAGFnlgKDVGPYMMSKVNAADASAAYKAFLEFKDAV 196 Heterocapsa pygmaea
Q8H1J5 127 D-SKGVATLADYTAINSAIGHMISSVPASKTMDVYNAFAKFklgSDVGPYMMSKVNAADAQAAYKALMDFKDVV 199 Symbiodinium pilosum
Q8H1I8 126 SgPNGVTSRADWDAVNAALGRVVASVPKAKVMAVYDSVKDIt-dPKVPAYMKSLVNGPDAEKAYQAFLEFKDVV 198 Symbiodinium kawagutii
2C9E_A  79 KnAKLMASKEDFAAVNEALARMIASADKQKFAALRTAFPES---RELQGKLFAGNNAFEAEKAYDSFKALTSAV 149 Amphidinium carterae
Q8GTH7 191 D-AKGVTSPADYEAVNAALGRIVASVPKQTVMDVYNSMAKVv-dPSVTNNMFSKVNPLDALSAAKGFYTFKDVV 262 Symbiodinium sp. JRR-35
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap