Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd06346: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380569
Aligned: 85 rows
Threshold Bit Score: 224.365
Created: 29-Feb-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                  ###
CDQ33133   28 KIGVLVPLTGdlqsYGEPALKAAQLAAKEINaaggv--lgedVAISSGDTqtsPQPGVAAAQKLVNi-eGVSAIMGALSS 104 Virgibacillus halo...
PIQ26451   25 QLGVAMPITGslsaKGPSRRKAADLAMQHLNlaggi--hnmpVKLFHIDSatnGTLAAQRVKDLLDqnpKIQALIGPSSS 102 bacterium (Candida...
OLE96781   53 RIGTLLSITGalsqYGPGDTQGAYLAVHQINaaggv--lgqpIQLFTEDDqtdQTAAASATTKLITq-nHVNAIVGAQFS 129 Cyanobacteria bact...
ELR73811   26 NLGLILPISKfk-dFSSELIQGGQLAVNEINasgyi--lgkqLHLIPADDaaeSGFAADKAQKLTSk-yKVAGLIGPTSS 101 Fulvivirga imteche...
ALU12728   59 KIGALIPMSGal-aSFANEKYAVQLAVRDLNacfkelnlpfkVEAYIEDTqttPQVALEKARKLVNi-nGVHMIVGPATS 136 Ignicoccus islandi...
PJB35081   51 YVASPLPYEGaw-aVGDQTEPGILIAIQEINaaggv--hgkpLGLVVCNTkgdGTVATQIMNELADt-sTVSATTCCMRS 126 Deltaproteobacteri...
ADN36901   43 VIGVLLPFSGnmeeYGVGFRDGIDMAIADINdeggi--rgipVRAEYQDTfgtPNIATFGFKRFADm--GISVIIGDASS 118 Methanolacinia pet...
OYT62265   35 PIGALLAMSGplstFGKREAIAAQMAIEDVNayvaklglnvkFKLYIEDTkvsPEEALARLSSLAAq--GVKVVIGPMAS 112 Thermofilum sp. ex...
AAL64861   70 YIGAALPLTGgsqsYGIGVKNAVELAVEDANkmcp----nikFELLVEDTgtnPQQALQKVQTLYAk--GARLIVGPMTS 143 Pyrobaculum aeroph...
ABK77851   48 DIGVVLPATGdlssHGYDNGLAAELALVDFNryldeidagweLNLVVEDSqadPIVALEKIQSLNSk--GVKLVLGTETS 125 Cenarchaeum symbio...
Feature 1                          ###                                                        
CDQ33133  105 gvtipvaqsvskaGQIPQISSASTspvits-------lddddFLFRTVPSDAFQGVALSEVTQekg--yeNVSIIYINNd 175 Virgibacillus halo...
PIQ26451  103 qesrqv-ldivkeKKIPMISPASTsaifss-------lededYFFRTVPSDAFQGQILVSKIHdfg--fkKIATLYIDNa 172 bacterium (Candida...
OLE96781  130 ggtias-igiakaAGVPMVSPSATspalsn------ltltggYFFRTAPSDALQGVVAANYLFnnl-syrYINLIGRDDs 201 Cyanobacteria bact...
ELR73811  102 srfikvvneviaeNPVVAISPSATsvevtt-------ledndMAFRTAASDALQGKTAAIYSSqnl-ghkTAAIFYLNNv 173 Fulvivirga imteche...
ALU12728  137 aavgtlqdiinseLKVILMSHSSTsplvrlnneeaikkngysYVFFSISSDFFQAKALASVVKsfg--ytNVVFFYRNDd 214 Ignicoccus islandi...
PJB35081  127 aatipa-aevastRGLVMVAPGATspaitd-------ladngWVSRTAPSDAQQGVVDAALARreg--wnKVFVPTLDDp 196 Deltaproteobacteri...
ADN36901  119 tntlki-aplaeeAGIVLVSPGATspdls---------qyknYVFRTISSDTYQGRGIAKVLMslypeaeNVSVVFMDNd 188 Methanolacinia pet...
OYT62265  113 sevaai-ksfadsNRIVVISQSSTafqla---------ipgdYIFRFVPTDLFQGKALAKLAEalg--lkKVAVIYRGDa 180 Thermofilum sp. ex...
AAL64861  144 gevsav-ksfadqNKIIIFSPSSTspllg---------ipgdWVYRIVPTDFAQAAAIADLLKtlg--vkRAVIIYRNDa 211 Pyrobaculum aeroph...
ABK77851  126 aelrnv-ksyaesNGMLLISPSSTspal----------aiddNIFRLVPDDTQQGRVLARLLQtqe--vtAAIPVYRGDv 192 Cenarchaeum symbio...
Feature 1     #                                                                 #             
CDQ33133  176 YGKGLAEAFTQAFekagGAVSATVAYeqg----qaaYRGELQQAASDda----------eALVLVGYpenGQTILRQALE 241 Virgibacillus halo...
PIQ26451  173 YGQSLNQVIKKGLkkngAEVLNEIAYpeai---ktsYLEEIKALFKQpv----------eAVCFIGYpgeAPAIFNAWMS 239 bacterium (Candida...
OLE96781  202 YGRGLVGVINTKFtalgGTVNTTVIInpk----atqFSTDLATLFQKnp----------qAVYFAGFpgeGLIVMSNWQA 267 Cyanobacteria bact...
ELR73811  174 YGKGLADEFKKNFeqsgGKIVGEAYYsplvnlrdydVSPKVAEILESkp----------nVLYLVSNsidIIDISHQLDS 243 Fulvivirga imteche...
ALU12728  215 YGKGFALAFKEAFse-lGGTAHLVPYdpn----arsYLAELRSVFNYkp----------qAIVWLAFd-eIKVILRQALT 278 Ignicoccus islandi...
PJB35081  197 WATGIQQVFIAEFtalgGEAVASVYSgtd----anfAQTIIDEAMAYgp----------dAVFLAGLevdGAAIVRTAID 262 Deltaproteobacteri...
ADN36901  189 YGTALAEAFMEAFrekgGNLTQEIEFsed----mgnYSDVALALKEGnp----------dAVVLISYqeeAAMIMNAARL 254 Methanolacinia pet...
OYT62265  181 WGDGLFAAFKANFer-iGGVVEGVRYdpa----skdLSPEVRRLSSIvsrfg---agpdvGVLMISFeddGISILTVARD 252 Thermofilum sp. ex...
AAL64861  212 WGVGLRNAITNESnklgINIVASQGYdpdpk-afptAVPEAIRKLSGalgqp----gsdaAIIFVTFeddGIAAIQAAAS 286 Pyrobaculum aeroph...
ABK77851  193 WGDGLYESTKSSFesfgGTFDEGIRYspe----stvFSTEAHLLNEKlgvylqdrpasevAIIMIGFe-eAVHFFNAASS 267 Cenarchaeum symbio...
Feature 1                   #                                                                 
CDQ33133  242 Ggf----fRNFVFTDGmkapel----vdnlgAQYLEGSVGTVPqarad--spgaQHFSSAYESEydsl-ppkpYLDTAYD 310 Virgibacillus halo...
PIQ26451  240 Sgla--pdIKWFFSDGlkasei---vqgvehPEKLDTSIGTIPsassq--qgdfQFFQDAYIAEygdf--pvsFAGNTYD 310 bacterium (Candida...
OLE96781  268 GlgnpgwdRPWVFSEGldsqafmdqlrdpsvGVDVTKIKGTSPvspf---gaihDTFVTQYKAAttttatpvlYTDYTYD 344 Cyanobacteria bact...
ELR73811  244 AqvfkdhrPAIIGSDAmrgdnv----lekasLPALDGMYGTSVkslke--tsfeEKFEKTYGKRpe-----yeETADVYD 312 Fulvivirga imteche...
ALU12728  279 Lgl---qkYPWFFTEAvkgpali-sdpvvakVLALKNVLGTAPyt--------sGNFIEYYKSVygnd--pveFSDTLYD 344 Ignicoccus islandi...
PJB35081  263 Sgf---tpSGWIFPDGlktqgf---vdavanNQYLEGALGTVPatlg----adwTVFRTTYQKFypgv-epfsYAANAYD 331 Deltaproteobacteri...
ADN36901  255 Qgm---ddTIWIGSEAliddk-----likstGDYSEGMIATMQanh-----iisESFAGRYMEEynks-yvdwPVPYGYD 320 Methanolacinia pet...
OYT62265  253 Dpvl--mkVKWFGTDGtaqstk----mveevGPIMAKLGGFPStlfqpamspkqREFAKRFEKRagea--pdaYSLNVYD 324 Thermofilum sp. ex...
AAL64861  287 Dpvl--skVRWIGTDGiaysdal--ikqvgkEMAAAKMLGTIAapdpn--dpkyQEFKQRYKAKygkd--pvaYDPYGYD 358 Pyrobaculum aeroph...
ABK77851  268 Yddl--stVLWIGTDSlanngql--tedpitAEFVEGVGFISAqfaas-qndqhDHVKEVLTEQigss--pnnYAYSSYD 340 Cenarchaeum symbio...
Feature 1                                                                                     
CDQ33133  311 AFYLLSLAaqaagstdsvairdqlravanpp--geqvgpgefekaaklleegkeidYEGASGSVNFDDn-GDVPg-TFGE 386 Virgibacillus halo...
PIQ26451  311 SVLLAALAiqrthfssthdlrqairevasppgtqirpgqeglkqalallakgedidYQGVSGDLNMDQv-GDVRn-DYEI 388 bacterium (Candida...
OLE96781  345 AVYLIALAaqkagsvdgnaikanlpvvakgsg-tvikpgqwslalstlnqsggavnWEGAAGSEDFDAn-GDVRg-PYEV 421 Cyanobacteria bact...
ELR73811  313 IVYLFALAmiqgnttdatalaehiravshtg---kkvkakdltevrkllkagkdidYDGVNSSLDFDKn-GDVPdrEYQI 388 Fulvivirga imteche...
ALU12728  345 AVWLVTLGalraasfnpnl--------------------------mehaiiemsyiYKGFSGDKSMNAiyQEPLttSYSV 398 Ignicoccus islandi...
PJB35081  332 AIYLLAIAmelsddpndrtqvrdnlaktkt----gqeihpgewskvlehladgslnYEGASGAVDLDAn-GDVTa-NVEE 405 Deltaproteobacteri...
ADN36901  321 TMMIISQVieakgyepdd-----------------------------iseglkeirYLGVCGAKSFDEn-GDIYp-SYDV 369 Methanolacinia pet...
OYT62265  325 AVWVVALAiiesrsydget--------------------------iakilpdvashYFGVSGWTILDAn-GDRAfgDYAI 377 Thermofilum sp. ex...
AAL64861  359 AAMMLMQIacqlgtddsdkv------------------------katleqwgrqgtYQGVTGKVYLDEa-GDRAypNYVI 413 Pyrobaculum aeroph...
ABK77851  341 SVWLFGMSilqlqtddpgl--------------------------imealptvaehYSGSLGTIILNDa-GDLAvsDYEL 393 Cenarchaeum symbio...
Feature 1        
CDQ33133  387 WTF 389 Virgibacillus halodenitrificans
PIQ26451  389 WTL 391 bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26
OLE96781  422 WGV 424 Cyanobacteria bacterium 13_1_20CM_4_61_6
ELR73811  389 WQL 391 Fulvivirga imtechensis AK7
ALU12728  399 WTV 401 Ignicoccus islandicus DSM 13165
PJB35081  406 WTI 408 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12
ADN36901  370 LQV 372 Methanolacinia petrolearia DSM 11571
OYT62265  378 WSV 380 Thermofilum sp. ex4484_15
AAL64861  414 WGV 416 Pyrobaculum aerophilum str. IM2
ABK77851  394 YSI 396 Cenarchaeum symbiosum A

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