6QJA


Conserved Protein Domain Family
HkD_NuMA

?
cd22224: HkD_NuMA 
Click on image for an interactive view with Cn3D
Hook domain found in nuclear mitotic apparatus protein (NuMA) and similar proteins
NuMA, also called nuclear mitotic apparatus protein 1, or nuclear matrix protein-22 (NMP-22), or SP-H antigen, is a microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles, and the alignment and segregation of chromosomes during mitotic cell division. The model corresponds to the N-terminal conserved globular Hook domain of NuMA, which folds as a variant of the helical calponin homology (CH) domain. It directly binds dynein light intermediate chains LIC1 and LIC2 through a conserved hydrophobic patch shared among other Hook adaptors.
Statistics
?
PSSM-Id: 411795
Aligned: 34 rows
Threshold Bit Score: 118.058
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:putative LIC-binding interface [polypeptide binding site]
Evidence:
  • Comment:the conserved Hook domain interacts directly with the dynein light intermediate chain 1 (LIC1)
  • Comment:based on the structure evidence that Homo sapiens Hook 3 (6B9H) interacts with a dynein light intermediate.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
6QJA_A          9 ATRGAALLSWVNSLHVad-pvEAVLQLQDCSIFIKIIDRIHgteegq-qilkqpVSERLDFVCSFLQKNrkhpsspeCLV 86   human
NP_001177854    5 TTRATALLAWVNSTKAcaeplGDLSQLQDCRVFIQIINKIHrteege-svleqsLAERAAFICGFLQKLckhksateNLV 83   chicken
NP_001081559    5 SGKMEALLCWVNSLKVde-piERFSQLQDLSILLKVVGVLSgnseetapvlqqdLEQRLNCLCSFLQRYcqtgssaqNLV 83   African clawe...
XP_007909988    5 RTKAEALVKWVNSLNLsd-kiENLAQLRDCVVFIKMVCWISgkesdsyqiedqtIEDRLRFVCNFLAQHfkynssvgDLV 83   elephant shark
XP_014348536    5 TTKATALIAWVNSLHVae-piVKLTQLQDCTIFIKIIGKVNrnesigsdvleasLQEKLQFLSNFLQFKcrynpasgGLV 83   coelacanth
XP_030055834    5 SPKIDALISWVNRLKVde-piDSMLQLKDCNIFVKIISKMTgnkeeeeqilqqpEPDRFHFVCNFLQKHckyvsaseDLV 83   Microcaecilia...
XP_018429879    5 GTLMESLLRWVNSLKVdd-piEHLSQLQDLNIIIKIINKLNgsseerpqilqrpLEDRLAYLQKHCRCGsk----veNLV 79   Nanorana parkeri
XP_013390853    3 SGRAGALVEWVNSIDGap-ciESLSQLNDGTLFIKLLEIIVpdtipa-glelnsVEERLEFLNKIISDVnnt--kveEKV 78   Lingula anatina
XP_022084506    3 VGKLKSLLQWVNSVGVgs-cvESLQQLREGTHFIGIIKIINgdrgt---qfcelPMQRFRLICSFLEDFygis-lqhHLD 77   crown-of-thor...
XP_019634543    4 RGKLDALLGWVNLLGVgt--vESLKELRDGNILVRIVQLIDpkiey----eaedPAGRVEVVKSFLEGFhvtslgddTYV 77   Belcher's lan...
Feature 1                                   #                 #  ## ##  ##  #                 
6QJA_A         87 SAQKVLEg--SELELAKMTMLLLYHSTMSSkspr----dweQFEYKIQAELAVILKFVLDhedglNLNEDLENFLQ 156  human
NP_001177854   84 SAQKLLEg--EELELAKVAVLLLYHSSMSSkspr----dwnEFDYQIQVELATILKFVLDhe--eSLSENLEVFLQ 151  chicken
NP_001081559   84 QWQKILQgenLEVELSKVIVILFYYSTMSSknpr----kseDIDHKTQTELASILRFVLDnedalCLDDKLINFLK 155  African clawed frog
XP_007909988   84 SCQEFLYgedVELEVAKVTVLLLHYYTLAKhlps----efeTLDTQTQGELVAILRYVLDnedgiHLDNNLSTFLR 155  elephant shark
XP_014348536   84 SWQNILQgenLEIELSKVTVLLLYLSTISYcqlk----eceGLEYNTQTELASILRFVLDne-neLCLSNLEQFLQ 154  coelacanth
XP_030055834   84 QWQKTLQedpSEMELSKVVVLLLYFSTMSLknqk----eseELDYKTQTELASILQFVLDne-elCLSDSLADFLQ 154  Microcaecilia uni...
XP_018429879   80 QWERIVHgesSDLEFCKILVLLFYLSNIKCknvr----dweSFDHKTQTDLATILRFVLDneddpSIDDKLIRFLQ 151  Nanorana parkeri
XP_013390853   79 NFRAIIDq-aDEFEIGKVVMLLLYIAMVFGnnqasfiqsamKLNTTTQAALKDMLEVFMEss-dhKIPPNFADILK 152  Lingula anatina
XP_022084506   78 HTQIIQQg--DVGELAKVTALLLCAAVQGPkvdff-vdmitKLDMVVQTHLKEIIEAIVAhgsdgSLQSNFASVLY 150  crown-of-thorns s...
XP_019634543   78 RWHLIRQa--NEDEIAKAATLLLYTAFVSDareqfmskmdgRMGKAWEVTIKDILQFNITnnerkGPRPDFADILK 151  Belcher's lancelet

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap