Conserved Protein Domain Family
CMD_Avi_7170

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TIGR04029: CMD_Avi_7170 
CMD domain protein, Avi_7170 family
Sequences in this family occur as the N-terminal domain of a fusion protein with a C-terminal peroxidase-like protein, or as discrete protein encoded next to a peroxidase-like protein. The two partners regularly are encoded near to, and in the same genomes as, a putative FMN-dependent luciferase-like monooxygenase (LLM) (TIGR04027), and an ABC transporter in which TIGR04028 models the substrate-binding protein. CDD identifies this family as falling within the CMD superfamily that includes carboxymuconolactone decarboxylase.
Statistics
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PSSM-Id: 213885
Aligned: 9 rows
Threshold Bit Score: 170.07
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011089639   6 DIIDTLAGIEPGSALDGIRAKRVQARENAQKSYLSLFEPI--DAGDFSLSERAAVAFFVIGLHREPVVAAFYRAKLAATA 83  Bradyrhizobium ...
WP_012087544  37 DVIDLLAGTTPDSPLSRTRAQRPRARENAQRSFEALLEPA--DPGSFSHTERYAVATFTAHLHRFEHAARFYADVLSDTA 114 Kineococcus rad...
WP_005327262   3 DIINELSHASAEVQ--QLRRARHDAQDNAQLSFSALLEPA--EPGEFSYTERYAVAAFTAAIYQASEAADFYFDLLGDEA 78  Corynebacterium...
AIK88639       3 DLIDML--VGEDLP--QLRDNRPQARDNAQKSFEALLEPV--NPGTFSFGERYAVATYVAGLHQFAPAVDLYQDLLLDDA 76  Corynebacterium...
WP_011091714  11 DVLDALAEIGPDSALAAARKTREAATRHTQGSYDALFNATvhDNATLPLSLRFWFATKISGWQQDEQLQHFYTERLADFP 90  Pectobacterium ...
WP_012038642   6 DVVDLLAGLAPDHPLRLIRDLRPDARANAQRSFEALLEPA--EPGAFTYAERYAVAAFVARLHGSDRAAAFYADLLGDAD 83  Clavibacter mic...
WP_012145870   9 DLLAVLAEIAPDSALAQARVTRQAATDAIQASYLALFAPA--DAGDFPIAQRLQTAQRISEWHADKPLAAHYAALLQQQG 86  Serratia protea...
WP_032412337   6 DILAELAEIAPGSPLDQARAVRDAATRHAQGSYEVLFRQQ--DA-DFPLDERFAVAAKVAKLHQADALAAHYAGFGLADP 82  Klebsiella pneu...
WP_012124877   6 DLLDTLADIAPGSPLALARATRDAATLNIARSREALFN----GASDLTRAERLHLAREVARWHEDEALSAHYSALLQDEP 81  Cronobacter sak...
WP_011089639  84 egA-R-LVEAIEVEIARGATSGPYgafpagplsveNTAGLIYRVS---AerkP---D---LGPRLVAALEHAHLLVFRPR 152 Bradyrhizobium ...
WP_012087544 115 --P-H-LLDPIHHAARDAASTGPAgtyrepglsaeSVPTTAWTPSpalA---A---Q---LGPRLSAALTHTHLLVFRPR 181 Kineococcus rad...
WP_005327262  79 --DeD-LVAAVRAASQRGVSTGPY-----------HQGDFLIFGD---T---A---AeaaLGTRLAAAFDWAHLLAFHPK 135 Corynebacterium...
AIK88639      77 --P-TtLANAVSDAIDEGLSAGPYgtyrepgleseSEPGGSVRND---A---A---K---LGERLAAAFDYAHLLVFHPR 141 Corynebacterium...
WP_011091714  91 --E-------------------------------------------------P---V---LTPALQLALDHAERLTKTPV 113 Pectobacterium ...
WP_012038642  84 --A-A-LVPVIDRAARQGATAGPTgtyrepglaaeSVATDPWTPD---A---AtrdA---VGPRLAAALAHAHLLVIRPR 150 Clavibacter mic...
WP_012145870  87 --G-------------------------------------------------A---E---DSPRLLAALDHAERLAFKPA 109 Serratia protea...
WP_032412337  83 --T----------------------------------------------------------TDRLVPALAFARLLTFTPV 102 Klebsiella pneu...
WP_012124877  82 --A-P--------------------------------------------------------PARLSVALGHAEILTFHPV 102 Cronobacter sak...
WP_011089639 153 DAASADMKALLAAGWSNTGIVTFSQLVAFLSFQVRVVTGLRVL 195 Bradyrhizobium diazoefficiens
WP_012087544 182 EAGPAALRDLLRAGWSADHVVSLSQLVAFLTFQLRTAWGLAVL 224 Kineococcus radiotolerans
WP_005327262 136 DASPQAIGHLDAAGWSATDIVSLSQLVAFLAFQLRVVHGLRVL 178 Corynebacterium tuberculostearicum
AIK88639     142 DSRPEVLGRLSGAGWSADDTVTLAQLVSFLAFQLRVAYGLRTL 184 Corynebacterium glutamicum
WP_011091714 114 QAAPSHVNALEQAGWSVDDIVTLSQLIAFVNFQSRLLRGYRLI 156 Pectobacterium atrosepticum
WP_012038642 151 ESSPDALRALGAAGWTPDEIVSLSQLIAFLAFQLRVAWGLAVL 193 Clavibacter michiganensis
WP_012145870 110 SADAQHLQALQQAGWSLDDIVTLSQLIAFVSFQSRLLTGYRLL 152 Serratia proteamaculans
WP_032412337 103 EATPGALHTLTSAGWSLRGIVTLAQLVAFVSFQSRLLLGLRAL 145 Klebsiella pneumoniae
WP_012124877 103 QATAQEIAALTEAGFSEEAIVTLAQVVAFVSFESRLLRGYRLI 145 Cronobacter sakazakii
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