Conserved Protein Domain Family
RING-H2_BB-like

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cd23115: RING-H2_BB-like 
RING finger, H2 subclass, found in Arabidopsis thaliana RING-type E3 ubiquitin transferase BIG BROTHER (BB) and similar proteins
BB (also known as protein ENHANCER OF DA1-1 or EOD1) is an E3 ubiquitin-protein ligase that limits organ size, and possibly seed size, in a dose-dependent manner. It negatively regulates the duration of cell proliferation in leaves and petals independently of the major phytohormones (e.g. auxin, cytokinin, gibberellin, brassinosteroids, ethylene, abscisic acid, jasmonic acid), probably by targeting growth stimulators for degradation. It limits the proliferation of root meristematic cells. BB polyubiquitinates DA1. It is involved in the promotion of leaf senescence, in addition to its function in restricting plant growth. BB-related is an E3 ubiquitin-ligase probably involved in organ size regulation. Members of this subfamily contain a C3H2C3-type RING-H2 finger.
Statistics
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PSSM-Id: 438477
Aligned: 7 rows
Threshold Bit Score: 101.369
Created: 14-Jun-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-H2 fingers with bound zinc
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #              # #  #  #          #  #     
Q8L649       191 KRAGERCVICQLKYKIGErqmnLPCKHVYHSECISKWLsINKVCPVCNSEVF 242  thale cress
XP_024375706 263 STDQEQCVVCRLEYEKGDkmlrLPCKHHYHSECIQQWLqHNKVCPVCSAEVT 314  Physcomitrium patens
Q9LT17       282 NGTNESCVICRLDYEDDEdlilLPCKHSYHSECINNWLkINKVCPVCSAEVS 333  thale cress
XP_002983644 307 SSDSEQCVICRHDYEEDEmlltLPCKHKYHSECIQQWLqINKTCPVCSAGVT 358  Selaginella moellendorffii
PNW77578     139 AIILDRCCICQVEFEDSDpattLPCRHCYHSECVRQWLqQSKACPVCGKEVE 190 
GAQ79294     944 DEKEIKCVVCQVEYEESEdvriLPCTHCYHADCIKSWLaTKNECPVCKAKAV 995  Klebsormidium nitens
XP_002907861 689 DQGNPDCLICRCSFEVGEeiksLPCFHSYHSDCVDSWLsLNKVCPVCQFSVD 740  Phytophthora infestans T30-4

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