Conserved Protein Domain Family
Twinkle_C

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cd01122: Twinkle_C 
C-terminal domain of Twinkle
Twinkle ( T7 gp4-like protein with intramitochondrial nucleoid localization, also known as C10orf2, PEO1, SCA8, ATXN8, IOSCA, PEOA3 or SANDO) is a homohexameric DNA helicases which unwinds short stretches of double-stranded DNA in the 5' to 3' direction and, along with mitochondrial single-stranded DNA binding protein and mtDNA polymerase gamma, is thought to play a key role in mtDNA replication. Mutations in the human gene cause infantile onset spinocerebellar ataxia (IOSCA) and progressive external ophthalmoplegia (PEO) and are also associated with several mitochondrial depletion syndromes. This group also contains viral GP4-like and related bacterial helicases.
Statistics
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PSSM-Id: 410867
Aligned: 21 rows
Threshold Bit Score: 322.65
Created: 13-Aug-2003
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
ATP binding
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                            #######  #                  
NP_068602    366 SIVSFRqLREEVLGELsnveqaa-glrwsrFPDLNRILkGHRKGELTVFTGPTGSGKTTFISEYALDLCsq---gvNTLW 441  human
CBY22848     250 ETGDVVnLGANMARAFaqsqtaadsikfsrFSMLNECMgGLRKGELTLFSGHTGKGKTTFLSEYSIDLAln---gaKTLW 326  Oikopleura dioica
EFV50054     316 CISPIGdLRSTVFDYIyrqgvtkgiaqwnrFHILNSYLgGLRLGELTIVSGPTGCGKTTFISLYSLDLCeqlekqiNTLW 395  Trichinella sp...
XP_002108711 109 RIVTFTdLRQDVYNEFanreqii-gvpwqrHPELTKILkGHRRGEMTIFTGPTGSGKTTFISEISIDLCnq---gvNTLF 184  Trichoplax adh...
XP_003385622 366 EILYFHqLENNVYEEFlntekva-gvkwkrFSKLTAILkGFRPGELTIFTGPTGSGKTTFMSEMSLDLCqq---gvSTLW 441  Amphimedon que...
CAK67525     428 NITQFTdFKQLTKNRIlnfelsk-gtqsqtFTTYNNTTkGLRTGEFTILTGPTGSGKTTFLSQLSLDFCke---giTTLW 503  Paramecium tet...
AAA84746     106 QILNFNdLRQHILEELkypdrin-gvrsktIPSLNKFLyGLRMGELSIWTGSTGVGKTTLLSQLSLDYCiq---gvSTLW 181  Plasmodium cha...
AAZ06404     453 QVISFQdIADEVYRNIcspdela-gvpskmFPSLTKILkGHRKGELTVFTGPTGVGKTTLLSQLSLDFAmq---gvRTLW 528  Acanthamoeba c...
XP_636842    488 QICDFSdVRSIIHNELkdplsvi-gkqskwFPSFNKVLkGHRKGELTIFSGPTGIGKTSVLSQLSLDFCsq---gtRTLW 563  Dictyostelium ...
CCA20483     436 QIATFEhLRQQVFEEIlnpirlr-gvqsrsLPSLNRLLkGHRLGEVTILTGPTGCGKTTLLSQLSLDLCgq---gvSTLW 511  Albugo laibach...
Feature 1           #                                                                            
NP_068602    442 GSFEISNVRLARVMLTQFAEgrle-----dqldKYDHWADRFEdlPLYFMTFHGqq--sIRTVIDTMQHAVYVydiCHVI 514  human
CBY22848     327 CSFEMKLEALQNMQAMQLCQksse-----dcqmEYEFVQEKLGn-LGILALNSEpgsmdPNELIDKLKELIENhgiDHII 400  Oikopleura dioica
EFV50054     396 CSFEVSTARLVHVMMQQLNSrkide---tiperELEIMYNKLSllPLYFTKFNGsf--eFREVVEAIEHHVEIydiRHVV 470  Trichinella sp...
XP_002108711 185 GSFEIRNVRIMKTMMRQFSGinfeeknklgkfeKYATQFEKLPlyFMHFYGSQD-----IKRVIQTMEHAAYIfdiEHII 259  Trichoplax adh...
XP_003385622 442 GSFELSNVRLIKTMMKQFSGvnfd-----dhlnEYQSYAEKFRtlPMHFMKFHGqt--eLTKVIEAMTHGVMVngiQHII 514  Amphimedon que...
CAK67525     504 GSFEIKTDRLAEHQLLQAYKtdlik----qkdlIDVAVQKFENemPIYYMNFYGst--dLDQIIDTIEYAIYEynvTHVC 577  Paramecium tet...
AAA84746     182 GSFEINNIKLAKVMLNQFCGknle-----knidLFDLYADKFEllPLKFLKFHGst--nIDQVLDAMDYAVYAydvKHII 254  Plasmodium cha...
AAZ06404     529 GNFEIKNTYLAQKMLLQYAGknlae---lqdraQWDEASRAFSdlPLYWMRFHGst--sVDQVLDAMDYAVYVhdvEHVV 603  Acanthamoeba c...
XP_636842    564 GSFELKVPRLARKMLSQFSNcnld-----khveNYQEIADNFSnmPMYFLRFFGst--qVDKVIDAMEYAVYVqdvEHIV 636  Dictyostelium ...
CCA20483     512 GSFEIQNTRLIHKMMTQLAGkslq-----gdpaAFEIAADSFEdlPMYFLRFFGtt--dVDELMDAVEYAVYAydvQHIL 584  Albugo laibach...
Feature 1         #                                               #                              
NP_068602    515 IDNLQFMMgheq------lstDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDdd------kELQTASIFGSAKASQE 582  human
CBY22848     401 IDNMQFLIfgs-------sadDAYMSQDNTIRMLRELATFTDVHITVICHPRKTSnvskkdgyaFLTEYDLSGRARSVQE 473  Oikopleura dioica
EFV50054     471 VDNLQFLAgavd-----qmvsDRFTVQDRVFAEFRRIATERNVHLTLVVHPRKELds------gQLSLNSLYGGVKASQE 539  Trichinella sp...
XP_002108711 260 VDNLQFLLnvdt------rddFAFRQQNLALSLFRRFASEKNVHVTLVVHPRKENdd------tDLQMASIGGSAKASQE 327  Trichoplax adh...
XP_003385622 515 IDNLQFMIgmks-----kcfeDSFHAQNAVFAEFRHFATEHNVHITVIIHPRKEDpd------rPLKTSSFFGTAKATQE 583  Amphimedon que...
CAK67525     578 LDNLQFMMgtqv------ggnRKFDFQDEIIEKFRRLTSNNDIHLTLVIHPRKVDen------eDLTIASIFGSAKATQE 645  Paramecium tet...
AAA84746     255 IDNLQFMLnin-------kfsDIYELQNIAIDKFRSFSTNKNVHITLVVHPRKEDn-------nLLSISSVFGSVKSTQE 320  Plasmodium cha...
AAZ06404     604 LDNLQFMLsgqawgqegvaagNKFDIQDRALEEFRRFASTKNVHITLVIHPRKTEdd------rPLNVASVFGSVKATQE 677  Acanthamoeba c...
XP_636842    637 LDNLQFMLgsqa------kgiERFEIMDDSIEKLRKFASQKNVHITLVIHPRKQDid------qVLNINDIFGTAKATQE 704  Dictyostelium ...
CCA20483     585 LDNVQFMMagqg------rgfDKFERQDAALDKFRRFATQKNVHITLVIHPRKEAeg------qDLSLSSVFGTAKATQE 652  Albugo laibach...
Feature 1                #           #                      #          
NP_068602    583 ADNVLILQDrklv----tgpGKRYLQVSKNRfDGDVGv-FPLEFNKnSLTFSIP 631  human
CBY22848     474 SDNVIILQTsqdi---esgvRKDWIQIHKCR-HGELGk-IGVKYNRdTKTYLQE 522  Oikopleura dioica
EFV50054     540 ADNVYVVQVkreidalgipkIHRYFQILKNRrMGELEvsNRLELKFnHDTVSHR 593  Trichinella spiralis
XP_002108711 328 ADNVMILQNir--------yKGKSIQVLKNRfDGDLGs-YKIMFSKeNLCMGSR 372  Trichoplax adhaerens
XP_003385622 584 ADNILILQSi---------gRDKFLQITKNRfSGNLGn-IKMLFDTnSLTYSGM 627  Amphimedon queenslandica
CAK67525     646 ADNVFIIQNr---------pRYRVFEIKKNRyDGEVGr-VGLGFDSnVKSFFEL 689  Paramecium tetraurelia
AAA84746     321 ADNVFIIQRqisk----nneAVFFIDIKKNRfKGSLGr-IPYLYNKeNMTIKEM 369  Plasmodium chabaudi chabaudi
AAZ06404     678 ADNVLILQYnk-------geDWKWLEVAKNRfDGELGp-IALQFNKrNKSYREM 723  Acanthamoeba castellanii
XP_636842    705 ADNVIILQNsk--------nNQRYLDIKKNRfSGDLGi-IPLSFEKeTNRFSES 749  Dictyostelium discoideum AX4
CCA20483     653 ADNVLILQRi---------rGQSRLDVRKNRfDGSLGs-VPLQYDSeSGCLKEW 696  Albugo laibachii Nc14

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