Conserved Protein Domain Family
Cap4_nuclease

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pfam14130: Cap4_nuclease 
Cap4 dsDNA endonuclease
This domain family corresponds to the N-terminal of CD-NTase associated protein 4 (Cap4) from bacteria and archaea. CD-NTase-associated protein 4 (Cap4) is a nucleotide second messenger sensor that functions is CBASS immunity. This is the effector domain which has dsDNA nuclease activity, sharing structural homology with type II restriction endonucleases and it has the putative active-site conserved residues required for divalent metal coordination. This domain is inactive as a monomer; after Cap4 signal recognition through its C-terminal SAVED domain, it oligomerises to closely locate two nuclease effector domains. This domain does not participates in ligand specificity and it has a promiscuous DNA cleavage response.
Statistics
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PSSM-Id: 433740
Aligned: 17 rows
Threshold Bit Score: 149.465
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q13PA4             33 HEFGGGHGNKGNDFARFWLINEMLALtEAGETDFLFILEYVQDIARLDK-PQSPATITLYQLKkKEGN---VWDLNSLAG 108  Paraburkh...
hku:LHK_01560       7 SNAGGPAARQGFKYQDHVAVSFIFKM-LRDSSYSQVECETADDIVAVSHhSSGMYVYEYIQVKtTEDDr--KWSVTEITA 83  
P52127              4 NDSGGVAAKHGFLFQDCVAAYHVTRM-LRDKTIRSVRCEVTDDIDIVSD-----GYIDFVQVKsTGKT---RWNISDIVQ 74   Escherich...
WP_013661256        4 SDSGGIGAKKGFLYQDYVAALYTLKM-LDDKSIEKVRCEVSDDIDIIYD-----DHIEYIQVKtTKADk--SWQLSEFTK 75   Marinomon...
jgi:Oter_4476      37 dSDPGDETAKKYRYQYAYGVILWAAChRREKDYVALWCEQHEDFLG----QVTEKLFDAYQIKtLKSGv-wQWNHDELVK 111 
jgi:Cyan7822_4780  13 tnDPGDETQRRFRYQAAYAAIKCLSLlDDSSLIDCIYCEHHEDILV----KHKDNSFIGLQVKtRASGqpfQANDEQVYK 88  
Q8RFV8              3 KDLSGSITKNRFRLELLWGISKVIDI-HKEGKDYTIIFDFKCDIEIHRD-----NELFFYQIKtKKTG---SYNEKDLCN 73   Fusobacte...
Q7N9G0             13 SERGGEIAQRGFDYQTCWALSQMLEY-ELDGKNYVFIFEYHDDVLILDD-EYSPTDLTFAQVKtSES----HWTAYDLHK 86   Photorhab...
WP_012837694       13 KERGGRHGGKGHEFQRYWALCHLLQV-DLEKDDYLLLLEFIEDVAVLNS-EFSPGQMELYQLKkKEGSs-tKWTKTNLAK 89   Comamonas...
Q121E3             13 KERGGRHGGKGHEFQRYWALCHLLKL-DLEQDDYLLLIEFIEDVAVLNA-ASTPTELDLFQIKkKEGAtgvKWTKTTLSK 90   Polaromon...
Q13PA4            109 L---------TAKGKQVKaDSPLAKLLKSVLGFKTLAADAEFVSNTRFRVELAAGGTALSmdy-------vaLSELTPER 172  Paraburkh...
hku:LHK_01560      84 L------------DGAKAnSSLLHKSLKC--DVRPGLARFRIVTKRDVAKSLEGFKTELDkr---------vLPDTTTER 140 
P52127             75 Ns-------kGADKKTIPcSSILHKSMQC-ESDLSLGRRYSIVTEEKVNKTLEYLTISPNar---------lDKPGRQEL 137  Escherich...
WP_013661256       76 AsykttktktGRERKKYNnDSILHKSLDC--DAEHLNGLFRIVTPRDVYANLSYLKIPLSer---------sGNPRREGI 144  Marinomon...
jgi:Oter_4476     112 T---------------------VKRFVALDTEFPGQIREFFFVSNAPCSDSEATDRIHLSplpvlrvltnqpYGPYPECC 170 
jgi:Cyan7822_4780  89 S---------------------IKKFVEHEIQFPRSFLHYVLVANCGF---WKANKTDKNlnyilelannchINDLDKLD 144 
Q8RFV8             74 K---------KNKEK----NSILGKLY--ALYSPEHDIKLAIVCNKQLKIKRKDIDFSeq-----------cFAKLDQGI 127  Fusobacte...
Q7N9G0             87 S-------------TKRKpISIIGKLFIHHRNFCNYSPQLLFVTNASFNLCEKNGGKSLFs-----------ASEIKDEH 142  Photorhab...
WP_012837694       90 P--------------PKEgKSILAKLHDSKSIAKDETAAIAFVSNVPVDLTLSSGDDPTGlse-------fsASQIKSTL 148  Comamonas...
Q121E3             91 P--------------PKDgMSILAKLYESKRISPDSSASIAFVSNAPVDLTLHDGKASTDheq-------fsASEIEKDL 149  Polaromon...
Q13PA4            173 Q--THLRDSTAARHGVAkt----dI----PLQrIGLRYAPIEVNDMRVHVIGAAHGML-KKLSAAHAAQADSFVDA---L 238  Paraburkh...
hku:LHK_01560     141 G--KRLQKQFKTFTSPQkrdftywA----DNCvWQVYGDVESLEAVNIKALSQLAERLgNR---PNFTQLQAIYDE---- 207 
P52127            138 I--DDLNKRTDNFLTDSgisvsdwI----DAAtWEVFSSLRELELLGIKNIRLASQDL-HGVILSSETVAEDIWCR---I 207  Escherich...
WP_013661256      145 L--KSLRGALRDYESPNgnnveywL----DHAtWQVIATDEQIKLAAFKIITTVAYEY-CGVHLNPTRDPQRILND---L 214  Marinomon...
jgi:Oter_4476     171 ---ERCLTDLATRAGCErgavaavL----CRMmLSVGPPEPSFE-------AEIQQNHlPHVEGCRDLAPRQLADLlgaL 236 
jgi:Cyan7822_4780 145 InlTKFIKTIDQEMGNTchdisaiIiktlQKTkLEVSPGLADIDAKLVDLISRVPKIK------ERELRYDQLNKItheL 218 
Q8RFV8            128 I--DYIKKELCKELNLKt------I----NLNnVFYIFDNMDLLNPENAIRGKLIKSF-EEIEGEEPQNPNALYRL---V 191  Fusobacte...
Q7N9G0            143 K--ISFKQAIKDQVKLDde----nI----DLSiLKFVQSSLSLDDHITHLKGKLCDFLcNKFGDDTTLSVNVLAAL---L 209  Photorhab...
WP_012837694      149 L--ADLKSSVATELGCDld----dI----DFDnLKFIRSPLAMDDLESHATGKVATFL-ATKFPDQSPRADVLCKA---I 214  Comamonas...
Q121E3            150 K--ESLQKSIAGELSCTeq----eI----EFGsLTFIKSPLAMDDLENHAIGKVSSYL-GQKFPTHSARADVFCKA---L 215  Polaromon...
Q13PA4            239 FAKLATAS 246  Paraburkholderia xenovorans LB400
hku:LHK_01560     208 FLEMADVA 215 
P52127            208 LDTVTRKG 215  Escherichia coli K-12
WP_013661256      215 LTNLIEKS 222  Marinomonas mediterranea
jgi:Oter_4476     237 ITRISRAS 244 
jgi:Cyan7822_4780 219 INKCLNAA 226 
Q8RFV8            192 YDTVKDKA 199  Fusobacterium nucleatum subsp. nucleatum
Q7N9G0            210 EKECRNKS 217  Photorhabdus laumondii subsp. laumondii
WP_012837694      215 YSELKVKA 222  Comamonas thiooxydans
Q121E3            216 YGELKIRA 223  Polaromonas sp. JS666
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