2UV3,2D9C,2JJS,2JJU,2JJV,2JJW,2WNG,2YZ1,4CMM,4I2X,4KJY


Conserved Protein Domain Family
IgV_SIRP

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cd16097: IgV_SIRP 
Immunoglobulin (Ig)-like variable (V) domain of the Signal-Regulatory Protein (SIRP)
The members here are composed of the immunoglobulin (Ig)-like domain of the Signal-Regulatory Protein (SIRP). The SIRPs belong to the "paired receptors" class of membrane proteins that comprise several genes coding for proteins with similar extracellular regions, but very different transmembrane/cytoplasmic regions with different (activating or inhibitory) signaling potentials. They are commonly on NK cells, but are also on many myeloid cells. Their extracellular region contains three immunoglobulin superfamily domains, a single V-set, and two C1-set IgSF domains. Their cytoplasmic tails that contain either ITIMs or transmembrane regions have positively charged residues that allow an association with adaptor proteins, such as DAP12/KARAP, containing ITAMs. There are 3 distinct SIRP members: alpha, beta, and gamma. SIRP alpha (also known as CD172a or SRC homology 2 domain-containing protein tyrosine phosphatase substrate 1/Shps-1) is a membrane receptor that interacts with a ligand CD47 expressed on many cells and gives an inhibitory signal through immunoreceptor tyrosine-based inhibition motifs in the cytoplasmic region that interact with phosphatases SHP-1 and SHP-2. SIRP beta has a short cytoplasmic region and associates with a transmembrane adapter protein DAP12 containing immunoreceptor tyrosine-based activation motifs to give an activating signal. SIRP gamma contains a very short cytoplasmic region lacking obvious signaling motifs, but also binds CD47 with much less affinity. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.
Statistics
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PSSM-Id: 409516
Aligned: 24 rows
Threshold Bit Score: 213.186
Created: 22-Apr-2015
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:4I2X: Human SIRP gamma forms a homodimer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #######           # # #           #    # #                        ##          #
2UV3_A         5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84  human
2JJW_A         5 QMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRGVGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRISSITPA 84  human
4I2X_E         5 QMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRGVGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRISSITPA 84  human
XP_001113542  33 QVIQPEKSVSVTAGESATLNCTVTSLIPVGPIQWFRGVGPGRELIYSQKEGHFPRVTIVSDPTKRNNMDFSIHISNITPA 112 Rhesus monkey
XP_003905005  33 QVIQPEKSVSVTAGESATLNCTVTSLIPVGPIQWFRGVGPGRELIYGQKEGHFPRVTPVSDPTKRNNIDFSIRISNITPA 112 olive baboon
XP_005568593  34 QVIQPEKSVSVTAGESATLNCTVTSLIPVGPIQWFRGAGPGRELIYNLKEGHFPRVTTVLDPTKRNNMDFSIHISNITPA 113 crab-eating mac...
XP_007960583  35 QVIQPEKSVSVAAGESATLNCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTPVSDPTKRNNMDFTIRISNITPA 114 green monkey
XP_010358821  34 QVIQPKKSVLVAAGDSATLNCTVTSLIPVGPIQWFRGAGPGRELIYHQKEGHFPRVTAVSDPTKRNNMDFSIRISNITPA 113 golden snub-nos...
XP_011829722  34 QVIQPEKSVSVTAGDSATLNCTVTSLIPVGPIQWFRGAGPGRELIYNLKEGHFPRVTIVSDPTKRNNLDFSIRISNITPA 113 drill
XP_011798772  33 QVIQPEKSISVAAGESATLNCTVTSLIPVGPIQWFRGAGPGRELIYSGKEGHFPRVTPVSDPTKRNNMDFSIRISSITPA 112 Colobus angolen...
Feature 1         ###                   ## # ## 
2UV3_A        85 DAGTYYCVKFRKGSp-DTEFKSGAGTELSVR 114 human
2JJW_A        85 DVGTYYCVKFRKGSpeNVEFKSGPGTEMALG 115 human
4I2X_E        85 DVGTYYCVKFRKGSpeNVEFKSGPGTEMALG 115 human
XP_001113542 113 DAGTYYCVKFRKGSp-DVELKSGAGTELSVR 142 Rhesus monkey
XP_003905005 113 DAGTYYCVKFRKGSp-NVELKSGAGTELSVR 142 olive baboon
XP_005568593 114 DAGTYYCVKFRKGSp-DVELKSGAGTELSVR 143 crab-eating macaque
XP_007960583 115 DAGTYYCVKFRKGSp-DVEFKSGAGTELSVR 144 green monkey
XP_010358821 114 DAGTYYCVKFRKGSp-YVELKSGAGTELSVR 143 golden snub-nosed monkey
XP_011829722 114 DAGTYYCVKFRKGSp-DVELKSGAGTELSVR 143 drill
XP_011798772 113 DAGTYYCVKFRKGSp-NVELKSGAGTELSVR 142 Colobus angolensis palliatus

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