Conserved Protein Domain Family
deacetyl_PgaB

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TIGR03938: deacetyl_PgaB 
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB
Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Statistics
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PSSM-Id: 274867
Aligned: 26 rows
Threshold Bit Score: 581.197
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
REF_jgi:Pcar_2791  21 DDFISLCFHDVRPDVG-----RGDDLSMSTDRFVALLTWLRQHHYQPIGIDDLLRARQGEKPLPEKAVLLTFDDGYRGFY 95  Pelobacter...
ABQ02266           26 DRYGVLAYHSVVDDTAakeekQYFPQTISANLLISHFNWLKDNGYNVVSWQQIIDAENGKSTLPEKAVVLSFDDGYATMY 105 Aggregatib...
WP_011220539       30 NTYVVLCYHDFIDVGLtp-nlRIFPDTLTRDRLIEHFNWFKQEGYNPVSYQQIVDAKAGHSSLPSKAILLTFDDGYESFY 108 Photobacte...
WP_011399312       25 NSYVVLGYHDFYDVKLnp-tkRIFANTLSRDRFVEHLNWIKQNNYHPVSFQQIIDAKEGKSKLPENAVLLTFDDGYESFY 103 Hahella ch...
WP_011260296       67 NGLLVLSYHDIRDDVRen--aDADAFAVSTQNFAAHLDWLSAHDYHPISLSQLIKASQGKATLPPRAVLLTFDDGLRSMY 144 Xanthomona...
WP_026006834       27 aGLLVLSYHDIRDDVAak--gDPDRYAVSTSNFAAHLDWLRSHAYHPVSVQQVLDARAGKRALPSRPVLLTFDDGLRSVY 104 Xanthomona...
WP_011200288       31 NHFGILCYHNIIDESVqs--eKYYPQTISAQKLISQFNWLRTNGYIPVSMQQILDARNGGKALPEKSVLLTFDDGYQSFY 108 Mannheimia...
WP_012072604       27 EHLGVLCYHNVIDESVpnkhqQYFPQTISAQTLITHFNWLRNNGYKPVSLQQIMDARNGRQPLPKKAVLLTFDDGYESFY 106 Actinobaci...
WP_005616312       25 NTYSVLAYHSVVDESApkdkrLYVSQTISSDQLIAHFNWFKSQGYNIVSWQQIVDAEKGKTKLPNKAVLLSFDDGYETMY 104 Actinobaci...
WP_011136489       19 QGLLILCYHEISQAQA-----RQDDESVDVDALARQLEWLRGAGFRFVSLDDAMAARAGGPALPDKSVLLSFDDGYRSVY 93  Chromobact...
REF_jgi:Pcar_2791  96 SQVFPLLKAYRYPAVLAVVGSWLDAAPGETVDYGGKLVPREKFL-SWPQLREMAESGLVEIASHSYNGHGGILANPQGNW 174 Pelobacter...
ABQ02266          106 NVIYPILKAYNYPAVFAPVSSWLDTPVNQLIPYANIKLPRNVFV-TWEQVREMEQSGLVEIASHTDNLHHGVRANPAGSQ 184 Aggregatib...
WP_011220539      109 STVYPLLKLYNYPAIFALVGKWLVPDANKKIEYGKAMISRKRFL-SWDQIREMERSGVVEFASHSFDSHYGINANPYGNE 187 Photobacte...
WP_011399312      104 TTVFPLLKLYNYPAVIALVGKWLEVEPGKEVLYGKTNLDRKHFL-NWAQIREMEASGLVEFASHTYNLHYGIYANPFGNE 182 Hahella ch...
WP_011260296      145 TRVYPLLRAYHYPALVAVITDYVDMAPDRTIDYGYRPFGHDDFL-TWDQLREMLASGLIEVASHTDNLHHGVQSNPYGNQ 223 Xanthomona...
WP_026006834      105 TRVFPLLQAYGYPALVAPVTSWVELPAGQVVPYGPRDFTRDDFV-TWAQLREMQDSGLVEIGSHSDDLHKGIPGNPFGNE 183 Xanthomona...
WP_011200288      109 TVIYPLLKAYNYPAVYAIVTDWIETPANKKVTYGDEKLDRKEFV-TWQQLREMKDSGLVEIASHTHDLHHGVKANPAGSN 187 Mannheimia...
WP_012072604      107 KVIYPLLKAYNYPAVYAIVTDWINTPSNRKISYGSQKLNRSEFV-TWRQLREMQASGLVEMASHTNDLHHGIKANPAGSS 185 Actinobaci...
WP_005616312      105 SVIYPLLKAYNYPAVFAPVSSWISTPMGQKIQYGNEKLDREKFFaTWQQIDEMQNSGLVEIASHTHDLHHGIKANPGGSQ 184 Actinobaci...
WP_011136489       94 TQVYPVLKAFRAPALIGLVGSWLSPPEGGSVNFAGVKVPRDDFL-SWGQIREMQASGLVEVANHTFDLHYGIQANPQGNL 172 Chromobact...
REF_jgi:Pcar_2791 175 QPIYTARGYDPETGHYENDATYIARIRADLEKGADLIERKVGVRPRVMVWPFGKYSKPAVGAASKAGMSVALGLG----- 249 Pelobacter...
ABQ02266          185 LPAVVAPEY--KNNRYESKTEYKNRLVQDFSRSSKSIQRQIGKKPRIMVWPYGQFNDVAIDAAKQSGMTHHFALGq---- 258 Aggregatib...
WP_011220539      188 QPAATTPAYNATEKRYETLSQYNKRLYADLTQSSSQMVSNLVKAPRILVWPYGAYSQNSINTAAKVGMPYTFSLD----- 262 Photobacte...
WP_011399312      183 QPAAVSPQYDKDRDVYESTENYDQRLRIDFKASKKQMTSRGLKSPRIMVWPYGAYNSHSIEIAKEQGYPYTFSLD----- 257 Hahella ch...
WP_011260296      224 APAVNTRIYDPTTQRYEDVGQYAERLRQDLARSVERIEHQLGVRPRAIVWPYAAYNQMSNDIAEQLGMPVSFDLE----- 298 Xanthomona...
WP_026006834      184 TPAAVTRRWDVGNG-YESEAHYRQRIETDLRHSRDAMVAHLGKPPRAMVWPYAAYNRASNEIAARLGMTLSFDLEgrshe 262 Xanthomona...
WP_011200288      188 VPAVITPAY--INGKYETESQYEARLRKDFQRSFSLLKQHLGAAPAAMIWPYGRFNEKAAAIAEEAGFKVHMSLV----- 260 Mannheimia...
WP_012072604      186 LPAVIAPAY--RNGKYETSTEYKNKLRKDFQQSYDLLKKNVGVAPRAMIWPYGHFTATSVNIAKDVGFDVHMSLI----- 258 Actinobaci...
WP_005616312      185 LAAMIAPEY--KNGKYETEEQYKSRILNDMKISSGLIKKHTGKAPQIMVWPYGAFTETTIKLAKEAGMPYHFTLK----- 257 Actinobaci...
WP_011136489      173 LPAASSARYDPASGSYESHGQFLARVERDLARNSALLRQKLGRAPRAMVWPYDSYTREAGAIAAKLGMPAMLTLD----- 247 Chromobact...
REF_jgi:Pcar_2791 250 -----DGPGDT-DH-LTEVKRFLIEGSLPLSSLAWRLRNL---L------ARDSRRVVQVDLDYIYDPNPEQTERNLGLL 313 Pelobacter...
ABQ02266          259 -----KIINKIgDR---YVGRLLIDTETGFSTIKNFLDGV---Dd-----ESKLMRIVHIDLDSLYDADKKQQAKNFDKL 322 Aggregatib...
WP_011220539      263 -----EGVNYVnDS-GRNVKRYLIEQEMTLERLDEILRGQ---Pe-----YEGPKRVVHVDLDYVYDPNPAVMNRNMDTL 328 Photobacte...
WP_011399312      258 -----EGVNMVnDS-GLNVYRYLMDQEISLEHFGRILKGE---Pk-----PPMVKRILHVDLDYVYDPDPKVIQQNIDLL 323 Hahella ch...
WP_011260296      299 -----GRSTPVtHD-LHGLARLLVTNNPTVTGLAFELRRN---Pa------LDGTRALQIDLDSLYDSDPAQQARNLDTL 363 Xanthomona...
WP_026006834      263 adigqQGRDRVdGQsLASLGRLLLFNNPDVRDLAGELRRD---L------SRDGVRAIQVDLDYVYDPDPAQLERNLDVL 333 Xanthomona...
WP_011200288      261 -----DTINNTpDQ-F-HLGRLLLDNETSINTIENYLKNK---Nk-----DVLVQRSLRIKLDDVYDPNPAQQSKNLDAL 325 Mannheimia...
WP_012072604      259 -----DTKTNVpGN-A-HLGRLLLDSETSITTIENYLKNK---Nt-----DLTIQRSLRIKLDDIYDPNPVKQNKNLDQL 323 Actinobaci...
WP_005616312      258 -----EKVNRVgDA---HVGRFLVDAESNFSVMARYLNRVadtDn-----ESFVQRKLHINLDFVYSPDPIKFKANYDAL 324 Actinobaci...
WP_011136489      248 -----DGVNGPdVP-LSALRRVLVGADMSLADFARLVQAS---QrwpqgiAPRPERAMPLSLDDIYDPDPAKQEEKLGKA 318 Chromobact...
REF_jgi:Pcar_2791 314 LDRIKAMQITTVYLQAFADPDGDGVADALYFPNDYLPVRADLFNRVAWQLKTRAGVKVYAWLPVLGFEIGR-PDLLVLSQ 392 Pelobacter...
ABQ02266          323 IERMYRYGITTVYLKAFSDPDGDGVADALYFPNRYLPVRDDIFSQIAWQLRTRANVKVYAWMPVLAFDLRNhVKEATYVV 402 Aggregatib...
WP_011220539      329 ISRIYNFGIDTVYLQAFADPDGNGIADALYFQNRHLPVRADIFNRVSWQLSTRAGVTVYAWMPVLGFNLGN-----KYDY 403 Photobacte...
WP_011399312      324 IERVSRYKVNTVYLQAFADPDGDGVADALYFPNRHLPVRADIFNRVAWQLRSRAGVRMYAWMPVLAFDLGE-----KYSY 398 Hahella ch...
WP_011260296      364 IDRVKRIGPTHVYLQAFADPDGNNTASALYFPNRHMPMREDLFNRVAWQLKTRAGVKVYAWLPVLGYELPD-LKQREALR 442 Xanthomona...
WP_026006834      334 VQRVKDIGPSHVFLQAFADPDGDGAADALYFPNRHLPMRADLFGRVAWQLRTRAGVRVFAWLPVLGFHLPD-AQQQAALQ 412 Xanthomona...
WP_011200288      326 IERIYRQDIERVYIQAFSDTDNDGVADALYFYNQQLPVRADLFSRVVWIIKTRLGKAVYAWMPISAFKGKN--------- 396 Mannheimia...
WP_012072604      324 IERIHRQGISRVYIQAFSDANHDGIADSLYFPNKYLPVRADLFSRVAWIIQARLGLEPYAWLPISVFDLTN--------- 394 Actinobaci...
WP_005616312      325 ISNVAKYGVTAVYLKAYSDSNKDGIIDAVYFPNKYLPVRADIFSQVAWQLRTRAGVKVYTWMPASLESLPE--------- 395 Actinobaci...
WP_011136489      319 LDRVKEMGASIVYLKAFHDQDGDGVARQLYFPNSHLPMRADLFNRAAWQLDSRVGVEVYAWLPVDGLRLPP-P------- 390 Chromobact...
REF_jgi:Pcar_2791 393 QPETGKISPDPHAYKRLSPFVPEVRALVHGIYGDLARYADFDGVLFHD----DAVLSSFEDAQPAAMAWRRERGLKDDLA 468 Pelobacter...
ABQ02266          403 DHRTNQPAKD--KYLRLSPYDRKNVEMIKSIYNDLSFYAKFDGILFHD----DAFLTDFEGVESHS----EGDGVTAAAK 472 Aggregatib...
WP_011220539      404 VTDSRFNAPDPNRYLRLSPFSTKNRKAINEIYTDLGAYGKFSGLLFHD----DALLTDFEDATPAALKQYQKWGLGKSVA 479 Photobacte...
WP_011399312      399 VTDVRTQKPAPEQYLRLSPFSEKNIETIGDIYEDLSLYGKFHGILFHD----DAFLGDFEDASPDALKQYAEWGLGDSIE 474 Hahella ch...
WP_011260296      443 IHSTERDGMY-----RLDFTNPQARQIIKDIYEDLAINSYMEGILFHD----DGYLRDTE--------------LPQLPQ 499 Xanthomona...
WP_026006834      413 IHGN-----DPKDVPRLDPGNPRTRQLVADIYEDLAANTYFEGLLFHD----DAYLRDDE--------------IPAYGN 469 Xanthomona...
WP_011200288      397 -----------------------NTQQIKSIYRDLALYSKINGILFDDnlssDNKFTDLK---------------PLDAA 438 Mannheimia...
WP_012072604      395 -------------------IDQHKMEMVKSVYQDLSLYTKFKGILLSD----EKTVDDDE-------------------- 431 Actinobaci...
WP_005616312      396 --------------------NLRQVNVMQSLYRDLSLYSKTDGLFFD-----------------------SKIGKHKWID 432 Actinobaci...
WP_011136489      391 --------------------------ALFDVYRELGRAGRFRGLLF------------------------RGEGLPPAGA 420 Chromobact...
REF_jgi:Pcar_2791 469 GVWSEEERT-RWSRLKTEYLIVFTQELADAVRAYRP----E----IETARNLYAPAVLASDGKLRFSQDPGLFLEAYDFT 539 Pelobacter...
ABQ02266          473 Q--------------KTLDLIGVTDELTNALKPYFL----SstpaLKTVRSLHASVITNPKAEEWFAQNLTTLTKHYDTT 534 Aggregatib...
WP_011220539      480 NIRNNPQKMtSWSKYKTQYLIDFTLELANSTRQYLS----GdgieLKLARNIYAQPVINPKSEEWFSQNLVAFSNAYDYT 555 Photobacte...
WP_011399312      475 AIHADKDLSkRWAELKTQHLIDVTHRLAKRSARYFAsdgqH----LLLARNMYAQPVLNANSEAWFAQNLEAFAKAYDHV 550 Hahella ch...
WP_011260296      500 EGHDG---------LRTQALIDFTMELRDSAQRWRP----K----LGTVRNLYAQPVLQPQSAAWFAQRLDLFNRAYDRT 562 Xanthomona...
WP_026006834      470 GDPA----------KRTQQLIGFTQELKAAAERWRP----K----LVTVRNLFAQPVLEPHSEAWFAQRLEAFASAYDYT 531 Xanthomona...
WP_011200288      439 SLR-------------------LTDELKDIVYPYPL----GgredFATMRMISAPVNMSDESEKQFNQNLAELNRHYDAV 495 Mannheimia...
WP_012072604      432 ------------------SLLKISNEIEKIISPYTL----WgnelFKTVGMISAPLNLSAQNKLQFSQRLTRFAERYDFV 489 Actinobaci...
WP_005616312      433 NSKETMALTkLWTEAAEPYFF---------FNRYT----------QRISRNIHPL-------DTNFTQNLVEFSKNYDSI 486 Actinobaci...
WP_011136489      421 -----PAMGgR---------DALQLRLAEAVRESNP----R----LKAASGLDGDALLSGAAD----DDWRRMLAEYDRV 474 Chromobact...
REF_jgi:Pcar_2791 540 ALMAMPY---LEGAS--DPES--WLRKLVAAIACFPDGLKKTVFELQSIDWNgRKQPVPTETLARHMRLLQ-SL-GAVNF 610 Pelobacter...
ABQ02266          535 AIMAMPYmehHQTISakQAEK--WFAALIQRVKAQA-PLNKVLFEFQSVNLK-TKQPIPETELISWIELLQ-RN-GIYSY 608 Aggregatib...
WP_011220539      556 AVMAMPY---MESAk--SPDK--WLGNIAN-IALKTVPSNKLIFELQAKNWK-NGKDIPASELSRQMEIIS-KA-GIQNY 624 Photobacte...
WP_011399312      551 AVMAMPY---MEQq--kNPEQ--WLRKLAQTALQRVNP-DKLVFELQAKDWR-DGSAIPASVLKRQMQIIS-AE-GIKSF 619 Hahella ch...
WP_011260296      563 ALMAMPW---MEGSH--DPER--WLDTLVSAVRAQDPEMKHTLFELQTVDWH-TQTPISGERLIAQIHRLQ-SQ-GVRHF 632 Xanthomona...
WP_026006834      532 ALMAMPY---MEQAn--DANA--WLTQLATRVGQQPRGFDKTIFELQTVDWR-SGKPLPDGVLLAHSKLLL-AA-GVRHL 601 Xanthomona...
WP_011200288      496 IVSAAPY---VKGSEltQSGArnWLGNIIKKTVPQ-VAKDRLAFELQTVDWR-TQQAITDDELIDWMRDIQtKY-HFYNF 569 Mannheimia...
WP_012072604      490 TVAASPY---GHNSDftGSQAknWVKNVVKSTTPYI-AKDKLAFELQTTDER-TGQKVSTNELVDWMKVLQ-EEsKVYNF 563 Actinobaci...
WP_005616312      487 LIEVRPY---SLGGVttKQEAknWLLDIVQRVKDSNVEKKQILFDFSVVNPK-TSENLSSEELISWIKLLE-KH-QIISF 560 Actinobaci...
WP_011136489      475 EVSAAPR-----QAAggNADD--WLRRLQRKVAETPGALEKTVFELPSVDPR-SGKPVPAETLAGWMRELN-GW-GVRQM 544 Chromobact...
REF_jgi:Pcar_2791 611 GYYPDDFHRDHPAATSLYSAFSVN 634 Pelobacter carbinolicus DSM 2380
ABQ02266          609 GYYPDNFVADQPNMQKMRRYMSLN 632 Aggregatibacter actinomycetemcomitans HK1651
WP_011220539      625 GYYPDDFIRGVPDQKTLRPVFSNR 648 Photobacterium profundum
WP_011399312      620 GYYPDDFIKGIPDINIVRPELSLN 643 Hahella chejuensis
WP_011260296      633 AWYPDDFIGNRPSTEDARAAMSAR 656 Xanthomonas oryzae
WP_026006834      602 AYYPDDFIGGHPSLPEAREAISAR 625 Xanthomonas axonopodis
WP_011200288      570 GYYPDNFQENQPKLNEIRPHFSIN 593 Mannheimia succiniciproducens
WP_012072604      564 GYYPDNFQLDQPELKKIRPHFSIN 587 Actinobacillus succinogenes
WP_005616312      561 GYYPNRYLFDEKMLQKMKPYVSSN 584 Actinobacillus pleuropneumoniae
WP_011136489      545 AYYPGLPDSDAAGWRTLRRAFSLA 568 Chromobacterium violaceum
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