1YIX


Conserved Protein Domain Family
TIGR00010

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TIGR00010: TIGR00010 
Click on image for an interactive view with Cn3D
hydrolase, TatD family
PSI-BLAST, starting with a urease alpha subunit, finds a large superfamily of proteins, including a number of different enzymes that act as hydrolases at C-N bonds other than peptide bonds (EC 3.5.-.-), many uncharacterized proteins, and the members of this family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 272852
Aligned: 19 rows
Threshold Bit Score: 263.737
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1YIX_A         3 LVDSHCHLDGLDYESlhkDVDDVLAKAAARDVKFCLaVATTLPSY--LHMRDLVGERD--NVVFSCGVHPLNQND---PY 75  Escherichia col...
P78005         3 YFDAHCHLNCEPLLE---QHEKSLANFRLIGLKANV-VGTNLTNS--QIAVNLAKQHPd-LLKAGVGIHPNDVQLfdlKA 75  Mycoplasma pneu...
Q58977         6 YVDAHCHIEDKAFNK---NRDEVIERAKKEDVIIVT-SGASLGGC--LRALELRKKYN---IYLTLGYHPSRVKAd--DK 74  Methanocaldococ...
P47255         3 YFDAHCHLNCEPLLS---EIEKSIANFKLINLKANV-VGTDLDNS--KIAVELAKKYPd-LLKATIGIHPNDVHLvdfKK 75  Mycoplasma geni...
WP_010883424   3 LADAHVHLSDDAFEE---DINSVLQRAQDSGVSLVVnVTTTEKEL--NRSFAYAERFPkiRFCHVGGTPPQDVDQd-iEE 76  Chlamydia pneum...
WP_010881348   1 MIDTHCHLDLLKKE----DREEA---FKDERLEYLInVGFDRKTI--KNAIEFAKNYD--KVYIAIGFHPHEADKv-tDK 68  Aquifex aeolicus
WP_000469349   2 FIDTHCHLDHKDYEN---DLEEVLKESLEKGVTQCViPGADMKDL--NRAIEISEKFE--GVFFAIGAHPYDVES----F 70  Helicobacter py...
WP_014541462  12 IVDAHVHLSSEEFIE---DFGDVVLRGKTAGVTRVVnVTTTKAEL--LRSFAYAEAYPdwMFYHVAGTPPQDAQDd-iEE 85  Chlamydia trach...
WP_010886103   1 MVDAHTHLDACGARDa-dTVRSLVERAAAAGVTAVVtVADDLESA--RWVTRAAEWDR--RVYAAVALHPTRADAl-tDA 74  Mycobacterium t...
WP_010885294   1 MIDAHAHLEFYKR-----DYESIIGEAK-EKLDGIIdSITEYRKAhvWKSWELLKGYFg-FLYPTLGYHPNEAKRg-nWE 72  Pyrococcus hori...
1YIX_A        76 DVEDLRRLA--AE-EGVVALGETGLDYYYTPE------T-K-----VR--QQESFIHHIQIGRELNKPVIVHTRDARADT 138 Escherichia col...
P78005        76 AQATLKKLVstHR-SFISCIGEYGFDYHYTKD------Y-I-----TQ--QEQFFLMQFQLAEQYQLVHMLHVRDVHERI 140 Mycoplasma pneu...
Q58977        75 VIEKVYNLIknNE-YEILAIGEIGMDIKDENY------K-R---------QEEIFKKFLSLAEELNKPIVVHARGFERKI 137 Methanocaldococ...
P47255        76 TKKQLNELLinNR-NFISCIGEYGFDYHYTTE------F-I-----EL--QNKFFEMQFEIAETNKLVHMLHIRDAHEKI 140 Mycoplasma geni...
WP_010883424  77 DYRNFHAAA--HS-KKLAAIGEVGLDYCFATE------EgI-----AR--QKEVLQRYLALSLECELPLVVHCRGAFNDF 140 Chlamydia pneum...
WP_010881348  69 DLDWLKKLA--EEnPKVRAIGEIGLDFYKNYS------D-K-----KK--QEEIFRKQIQIAKELGLPVVIHMRDAEEET 132 Aquifex aeolicus
WP_000469349  71 DESLFEKFV--GH-QKCVAIGECGLDYYRLPElnerenY-K-----SK--QKEIFTKQIEFSIQHNKPLIIHIREASFDS 139 Helicobacter py...
WP_014541462  86 DFQEFCRAA--EG-GKLAAIGEVGLDYLFAVQa----sE-Q-----ER--QKEVLCRYLQLALQHELPLVVHCRGAFEDF 150 Chlamydia trach...
WP_010886103  75 ARAELERLV--AH-PRVVAVGETGIDMYWPGR------L-DgcaepHV--QREAFAWHIDLAKRTGKPLMIHNRQADRDV 142 Mycobacterium t...
WP_010885294  73 KVKRVEEFIleHK-DEIYGIGEIGLDYYHAKT------S-K-----ERenQRIIFEHFLNIAQELRLPVVIHARMAEREA 139 Pyrococcus hori...
1YIX_A       139 LAILREE----KvT----DCGGVLHCFTEDRETAGKLLDL--G-----FYISFSGIVTFRNAEQLRDAARYVPLDRLLVE 203 Escherichia col...
P78005       141 YEVLKRL----K-P----KQPVVFHCFSEDTNTALKLLTL--RevglkVYFSIPGIVTFKNAKNLQAALSVIPTELLLSE 209 Mycoplasma pneu...
Q58977       138 FDIAKD------------KVDIMFHCYSGDVELAKEIGKE--G-----HLISISTLVCFSEHH--KKLVESLDLEYLTTE 196 Methanocaldococ...
P47255       141 YEILTRL----K-P----TQPVIFHCFSQDINIAKKLLSL--KdlnidIFFSIPGIVTFKNAQALHEALKIIPSELLLSE 209 Mycoplasma geni...
WP_010883424 141 FRMLDQYyhndP-R----SRPGMLHCFTGTLEEAQELISR--G-----WFISISGIVTFKNAQDLRDLVVELPLEHLLIE 208 Chlamydia pneum...
WP_010881348 133 IRILREE----GaY----EVGGVMHCFTGSYETMKKAVDM--G-----FFISYSGILTYKNAESVREVAKRTPTSRILLE 197 Aquifex aeolicus
WP_000469349 140 LNLLKNY------P----KAFGVLHCFNADG----MLLELsdR-----FYYGIGGVSTFKNAKRLVEILPKIPKNRLLLE 200 Helicobacter py...
WP_014541462 151 FHILDHV----Y-RvdqqAKPGMLHCFTGTYEEATELLAR--D-----WYISISGIVTFKNAKSLQDLVEKISLERLLVE 218 Chlamydia trach...
WP_010886103 143 LDVLRAE----G-A----PDTVILHCFSSDAAMARTCVDA--G-----WLLSLSGTVSFRTARELREAVPLMPVEQLLVE 206 Mycobacterium t...
WP_010885294 140 FNIIQ------K-F----DVNAYFHSYTGPVELAKEISEN--G-----HFIGIVTGIVFIP--EVRKVAEKMDIEGLLAE 199 Pyrococcus hori...
1YIX_A       204 TDSPYLAPVPHRGKENQPAMVRDVAEYMAVLK-GVAVEELAQVTTDNFARLFH 255 Escherichia coli K-12
P78005       210 TDSPYLAPVPFRGKTNWPECVVHTVQTIADIK-QVPLAEIKQAIVHNAKKLFW 261 Mycoplasma pneumoniae M129
Q58977       197 TDSPYLS--PIKGTKNEPKNVKLVIEEIAKIK-EMEVEEVKDVIYKNTCKFFK 246 Methanocaldococcus jannaschii DSM 2661
P47255       210 TDSPWLTPSPFRGKVNWPEYVVHTVSTVAEIK-KIEIAEMKRIIVKNAKKLFW 261 Mycoplasma genitalium G37
WP_010883424 209 TDAPFLAPVPYRGKKNEPAHVLHTINAVANVK-GMFPQELAALAYKNVLRFLH 260 Chlamydia pneumoniae
WP_010881348 198 TDSPFLAPEPVRGKPNKPTNIFYTAQVLAELLpNTSLEDVDRMTTQNAKLAFN 250 Aquifex aeolicus
WP_000469349 201 TDSPYLTPHPFRGTRNSPTYIPLIAQKIAEII-NIETEELASLSTHNAQMLFS 252 Helicobacter pylori
WP_014541462 219 TDAPYLAPTPLRGKRNEPANIVHTLARIAEIK-GISVYELQDAVSTNVQRWLR 270 Chlamydia trachomatis
WP_010886103 207 TDAPYLTPHPHRGLANEPYCLPYTVRALAELV-NRRPEEVALITTSNARRAYG 258 Mycobacterium tuberculosis
WP_010885294 200 TDSPYMS--PYKGIKNKPWFVKIVLEELSKIK-EIPIEEVEEIIDGNIKKFFS 249 Pyrococcus horikoshii
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