Conserved Protein Domain Family
GspF

?
TIGR02120: GspF 
type II secretion system protein F
This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking]
Statistics
?
PSSM-Id: 273980
Aligned: 11 rows
Threshold Bit Score: 440.997
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAN82536       3 YRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRP----Q----------KSSG--------VK-TRRPRISHS 59  Escherichia col...
AAD05175       4 FRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPaa-sAqr-------gARSQ--------RL-ALGRKLSQR 66  Burkholderia ps...
AAQ61474       4 FKYTAYDAAGKEQSGLLEADSARAARAQLRERGLLPVTVDgv--sAkt--------gGAG--------SN-VLRRGLPRA 64  Chromobacterium...
WP_011070565   4 FEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPvtekEak-------aKSSG--------FA-LFKRGISVA 67  Shewanella onei...
WP_011552583   4 FEYRGLNSAGKQIKGLLEADSPKTLRSKLRADGIFLTDVLAq---AegsraavakgTNAAlvardidlRK-LGRGRVNTD 79  Myxococcus xanthus
WP_011003007   4 FRYEAADASGRTDRGVIEADSARQARTALRARGLTPLVVDAl---Gaq-------aAKRA--------GS-RFGKRLSPQ 64  Ralstonia solan...
WP_003112721   4 FRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREq---Agg-------gTGQG--------AGaLFAPRLSDG 65  Pseudomonas aer...
WP_010940995   4 FRYSAYTAGGRETSGTIEAESLKEAKLHLKRDGLYPRDIGPv---Set-------aGTVS--------RR-FGGRNAGPA 64  Geobacter sulfu...
WP_010918064   4 FDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMAs---Vak-------pARVG--------RF-ALGQGLSAK 64  Caulobacter vib...
WP_010952223   4 YRYQAVDLAGKSHKASLQADSERHARQLLREQGLFARQLQRh---Da-----------gS--------RQ-PRRQRLSRA 60  Pseudomonas putida
WP_005767347   4 FKYRALDAQGAAQNGTLEARDQDAAIAALQKRGLMVLQVDVa---Gl---------GGLR--------RV-LGSGLLNGA 62  Pseudomonas syr...
AAN82536      60 ELTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLL 139 Escherichia col...
AAD05175      67 EQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSLANALTQHPRDFPEIYRALVAAGEHTGKL 146 Burkholderia ps...
AAQ61474      65 ELVMITEQLSTLLNAGLTLEKALTAVTEQSENARSRTVLAALRSDILEGKGFAQALSSAPGVFSPLYRSLVQAGEQSGHL 144 Chromobacterium...
WP_011070565  68 ELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEFPHIFDDLYRAMVASGEKSGHL 147 Shewanella onei...
WP_011552583  80 DVAIFTRQLSTLLGAGVTLVESLSALVDQVEKERFKRALSDIKQRVNEGSSLAEAMGQHPKIFPSIYVNMVRAGEASGAL 159 Myxococcus xanthus
WP_011003007  65 ENALVTRQLASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSLSVALAQHPRDFPDIYRALVSAGEHSGNL 144 Ralstonia solan...
WP_003112721  66 DLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDL 145 Pseudomonas aer...
WP_010940995  65 QVALMTRRLATLVGSQVPIYEAVTTLWEQEEPGEIKKALGRIRERLAEGANLAKALSLEPRLFSESYVAMVAAGEASGAL 144 Geobacter sulfu...
WP_010918064  65 DRSMFTRQLATLTSVS-TLEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSDAMGRPAKAFPPLYRAMVAAGESSGAL 143 Caulobacter vib...
WP_010952223  61 QLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGLARSLARQGAPFTGLYCALVEAGERSGHL 140 Pseudomonas putida
WP_005767347  63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEGSQFSPLYISMVRAGEAGGAL 142 Pseudomonas syr...
AAN82536     140 APVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGP 219 Escherichia col...
AAD05175     147 GIVLSRLAHYIEERNALKQKILLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWW 226 Burkholderia ps...
AAQ61474     145 DMVMSRLAEYLDKRQNTQQKVTLALAYPAVVTLVAILVVAGLMSYVVPQVVSVFAQTKQSLPFLTRALVACSDFLRQWGV 224 Chromobacterium...
WP_011070565 148 EVVLNRLADYTERRQQLKSKLQQAMIYPIMLTLVAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNYGL 227 Shewanella onei...
WP_011552583 160 DAVLTRLADFTENQARLQQKILSTMLYPAIMMVVGGGILVALMVFVVPKVTKIFETMKATLPLSTRFLIASSNFFQSWWF 239 Myxococcus xanthus
WP_011003007 145 GLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGW 224 Ralstonia solan...
WP_003112721 146 AQVMERLADYIEERNALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGW 225 Pseudomonas aer...
WP_010940995 145 DAVLERVALFLEEQRAIRSKITASLAYPTLMVLVGSAVMLFLLAFVIPKIVTIFEDNRAALPLITIALIKTSTFLRSFWW 224 Geobacter sulfu...
WP_010918064 144 PAILDRLADLLEQQQQVRAKITTALVYPIVLAVVACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGW 223 Caulobacter vib...
WP_010952223 141 AQVLTRLADHLEQVQRQQHKARTALIYPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGP 220 Pseudomonas putida
WP_005767347 143 ESTLRQLSDYLERSQLLRGEVINALIYPAFLVVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILDLGQFLGDYGL 222 Pseudomonas syr...
AAN82536     220 TLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQ 299 Escherichia col...
AAD05175     227 AILIGIAAVVYLVKATLSRDGPRLAFDRWLLTAPLAGKLVRGYYTVRFASTLGILTAAGVPILRALQAAGETLSNRAMRG 306 Burkholderia ps...
AAQ61474     225 ALLIGIAAAAFLIVRALRAPALKRRFHARVLKLPVFGRLFRALNTARMASTLSILVGSGVPLLTALETARGLMTMLPMQD 304 Chromobacterium...
WP_011070565 228 LVVLVLGILLVVFQRLLKSPIFKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNMRVRA 307 Shewanella onei...
WP_011552583 240 ILLPAMALGVVLFMRWTKSPSGKPKWDRITLKAPVVGNLVRLLSISRFARTLSTLLKSGVPLLAAMDIVKAIMTNTVLAE 319 Myxococcus xanthus
WP_011003007 225 LAAIVLAALGLLVRKLLQQPALRLSWHRWLLTAPLFGKLVRGYNTARFASTLAILSSAGVPILRGLQAAGETLNNVALKT 304 Ralstonia solan...
WP_003112721 226 LCAGAIGSAYWGWRLYLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLAQ 305 Pseudomonas aer...
WP_010940995 225 ACIAAVAGVVLLYRRLMKDDAFRLRRDRFLLRIPVVGSLLRQLILSRFAKVLGLLLSSGVPVMRALEITAQVVVNRHYRA 304 Geobacter sulfu...
WP_010918064 224 LIVVSAVVAVFAFLRALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTVRNAVLQA 303 Caulobacter vib...
WP_010952223 221 WLLGVALLLGGLAGWLLRKPHWCLRRDQLLLRLPRIGNLLQVLESARLARSLAILCGSGVALLEALQVATETIGNRRIRL 300 Pseudomonas putida
WP_005767347 223 AVFASLIALIWGMAIRMRDPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRALQA 302 Pseudomonas syr...
AAN82536     300 RLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIV 379 Escherichia col...
AAD05175     307 NIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAECESRELERRTMFLTSLLEPLLILAMGGIV 386 Burkholderia ps...
AAQ61474     305 AVADAMAKVREGVSLSRALNASRQFPPVLIHLISSGEASGTLSHMLDRAAQQQEQEVERKLATFTTLMEPLLILVMGGMV 384 Chromobacterium...
WP_011070565 308 AVDDATARVREGTSLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADNQDREFESNVTLALGVFEPMLVVSMAGVV 387 Shewanella onei...
WP_011552583 320 VVEKARDSIREGESIANPLKRSGEFPPLVYHMVAIGERSGQLEEMLTSVADNYETQVNVRISALTSLLEPLLIVVMGAVI 399 Myxococcus xanthus
WP_011003007 305 NVEDAATRVREGTSLARALAAQNQFPPVLVHLIRSGEATGNLPAMLERAAQGEAQELERRTLFLTGLLEPALILTMGVVV 384 Ralstonia solan...
WP_003112721 306 AVEEATAQVREGVSLASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVV 385 Pseudomonas aer...
WP_010940995 305 ALTGVTAGLAEGGTLSGALRTTGLFPPLLVHMVAVGEKGGELEEMLGKAGSAFEREFESSVSGLMALLEPLLVLAMGLAV 384 Geobacter sulfu...
WP_010918064 304 ALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYLEREFETFTATLLSLLEPAIIVLLGGVV 383 Caulobacter vib...
WP_010952223 301 AMEQVRQHVQGGTSLHRALDASQQFPPLLVNMVGSGEASGTLADMLERVADDQERGFARQVDTAMALFEPLMILVMGAVV 380 Pseudomonas putida
WP_005767347 303 QVGQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLLKVADVFDVEAKRGIDRMLAALVPALTVVMAGMV 382 Pseudomonas syr...
AAN82536     380 LFIVVSVLQPLLQLNSMI 397 Escherichia coli CFT073
AAD05175     387 LVIVLAVMLPIIELNNMV 404 Burkholderia pseudomallei 1026b
AAQ61474     385 LLIVLAIMMPIIDMNQMV 402 Chromobacterium violaceum ATCC 12472
WP_011070565 388 LFIVMAILQPILALNNLI 405 Shewanella oneidensis
WP_011552583 400 AFVALSILMPILQVNSAI 417 Myxococcus xanthus
WP_011003007 385 LLIVLAVLMPIIEINQLV 402 Ralstonia solanacearum
WP_003112721 386 LTIVMAVLMPIIEMNQLV 403 Pseudomonas aeruginosa
WP_010940995 385 GLVVVAVLLPIFELNQLI 402 Geobacter sulfurreducens
WP_010918064 384 ATIVLSILLPILQINNLA 401 Caulobacter vibrioides
WP_010952223 381 LFIVLAVLLPIMQLNQGL 398 Pseudomonas putida
WP_005767347 383 AVIMLAIMLPLMSLTSNI 400 Pseudomonas syringae group
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap