4JIX,4QHI,4JIU,4QHF


Conserved Protein Domain Family
M48_yhfN_like

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cd07344: M48_yhfN_like 
Click on image for an interactive view with Cn3D
Peptidase M48 YhfN-like, a novel minigluzincin
M48 YhfN-like protease is considered as a CaaX prenyl protease 1 homolog, with most of the sequences in this family as yet uncharacterized. It contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is probably associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. This novel family of related proteins consist of the soluble minimal scaffold similar to the catalytic domains of the integral-membrane metallopeptidase M48 and M56, thus called minigluzincins.
Statistics
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PSSM-Id: 320703
Aligned: 481 rows
Threshold Bit Score: 49.749
Created: 11-Mar-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteactive site
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:Methanocaldococcus jannaschii jannalysin metallopeptidase zymogen binds zinc; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                         #   #       
4JIX_A     12 IKDIVNEILISlni-------nesINIEIKP--MKQKIASFSfktKTLRLNKYVVenfDEELLHYIILHELIHFKIksiN 82  Methanocaldococcus...
4QHI_A      7 LNEILSNTINElnlnd----kkanIKIKIKP--LKWKIASISltnKTIYINKNILpylSDEEIRFILAHELLHLKYg-kY 79  Methanocaldococcus...
4JIU_A      2 VEDLLEHAKDIlgy-------qrpVKVRIRP--LKMSIARVSfkyGTITLDPAVLn-lEEEEMFYILIHELAHLKAetsY 71  Pyrococcus abyssi GE5
4QHF_A      7 LNEILSNTINElnlnd----kkanIKIKIKP--LKRKIASISltnKTIYINKNILpylSDEEIRFILAHELLHLKYg-kY 79  Methanocaldococcus...
NP_046407   5 VENLLKELKERlgi-------ereVKIELKR--FKRKLAPVSltkRVIYINRELIpklSDEELGYLIAHELLHLKHg-iY 74  Aquifex aeolicus VF5
EDY36516    4 IKVLLNDVKNAin---------lnENVKIKVvpMKQKIASISlrtKILRLNKNIIeklNDEELRYIIAHELIHLKVkdiN 74  Aciduliprofundum b...
CDD16979  133 CNNELERAMEKarlll----giapEDYYVKE--LGNNLATFSfetKCITFNPTIAa-yGQDIIDYLVIHEFCHLKYk--I 203 Clostridium sp. CA...
ADO84554  102 GIKILMNKIKKwsdii----gvspLQVRIKP--LKTAWGICYs-nGNISLNIKLIk-aDPKIIDYVIIHELCHLIHh--N 171 Ilyobacter polytro...
EKJ85830  116 FRDLLLKKIEPmvqstsyalntkvSKISIKP--MRSLWGSCNs-kNQISLNLSLIh-cPDQIIEYIVLHEIAHTIEh--N 189 Leptospira meyeri ...
EDS76036  122 LYDYLLKRINFyikkm---fdltlPQIEIRK--LKSRWGACFpqnNKLSFNLYLVh-lDKSLIDYVIIHELCHFIHp--N 193 [Clostridium] spir...
Feature 1     #                            
4JIX_A     83 HGIKFENELRNYFSknecDEIELKIIQKL 111 Methanocaldococcus jannaschii DSM 2661
4QHI_A     80 HINEFEEELLFLFPn--kEAILINLINKL 106 Methanocaldococcus jannaschii DSM 2661
4JIU_A     72 HSSSFWREVEKVFPgeraKEIEDRIMTKL 100 Pyrococcus abyssi GE5
4QHF_A     80 HINEFEEELLFLFPn--kEAILINLINKL 106 Methanocaldococcus jannaschii DSM 2661
NP_046407  75 HISEFEKELLELSGkdlyLSLYRKTWKGY 103 Aquifex aeolicus VF5
EDY36516   75 HGSLFWRELEKVFSsndiVNLEIDMIKKL 103 Aciduliprofundum boonei T469
CDD16979  204 HSKGFWKMIEKYCPd---YEKYEKLLENF 229 Clostridium sp. CAG:798
ADO84554  172 HSKEFWNELKKYYPd---YKEAKIVLKNE 197 Ilyobacter polytropus DSM 2926
EKJ85830  190 HSSKFWKIVESQNPn---YKIAEKWLKEI 215 Leptospira meyeri serovar Hardjo str. Went 5
EDS76036  194 HSNEFYSEVEKRLPn---YRIKIKELKEI 219 [Clostridium] spiroforme DSM 1552

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