2Z73,2ZIY,2J4Y,1F88


Conserved Protein Domain Family
7tmA_Opsins_type2_animals

?
cd14969: 7tmA_Opsins_type2_animals 
Click on image for an interactive view with Cn3D
type 2 opsins in animals, member of the class A family of seven-transmembrane G protein-coupled receptors
This rhodopsin family represents the type 2 opsins found in vertebrates and invertebrates except sponge. Type 2 opsins primarily function as G protein coupled receptors and are responsible for vision as well as for circadian rhythm and pigment regulation. On the contrary, type 1 opsins such as bacteriorhodopsin and proteorhodopsin are found in both prokaryotic and eukaryotic microbes, functioning as light-gated ion channels, proton pumps, sensory receptors and in other unknown functions. Although these two opsin types share seven-transmembrane domain topology and a conserved lysine reside in the seventh helix, type 1 opsins do not activate G-proteins and are not evolutionarily related to type 2. Type 2 opsins can be classified into six distinct subfamilies including the vertebrate opsins/encephalopsins, the G(o) opsins, the G(s) opsins, the invertebrate G(q) opsins, the photoisomerases, and the neuropsins.
Statistics
?
PSSM-Id: 381741
Aligned: 70 rows
Threshold Bit Score: 205.133
Created: 10-May-2005
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:2ZIY: Todarodes pacificus rhodopsin binds retinal, contacts at 4A.
  • Structure:1F88: Bos taurus rhodopsin binds retinal, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     #  
2Z73_A        35 YSLGIFIGICGIIGCGGNGIVIYLFTKTKSlq-tpANMFIINLAFSDFTFSLVNgfPLMTISCFLkkwifgfaaCKVYGF 113 Japanese flying...
2ZIY_A        34 YSLGIFIGICGIIGCGGNGIVIYLFTKTKSlq-tpANMFIINLAFSDFTFSLVNgfPLMTISCFLkkwifgfaaCKVYGF 112 Japanese flying...
EKC20546      23 YIFGVIYMLLNVVATTGNVVVLYVFFRSKKlh-saIYFMISALCLGDLLMSSVGl-TILSIASFAtywvlgdwgCIAYGT 100 Pacific oyster
EKC20545      29 YAIGVAFVLIMLISTLGNGGVMYVFIRTRNlr-tpNYFLVSALCLGDFLMSTLGm-PMFITSCFFtrwilgrvgCLVYGT 106 Pacific oyster
AFZ78084       7 SVFAIIAAVICVLGVPLNGLVCWVFYNNREll-naPNIFIASVAFSDFLYCISCl-PLLVISNAYgkwiygpigCKATAF 84  elkhorn coral
NP_001026387  17 FAIGTALLVEALLGFCLNGLTIISFRKIKElr-tpSNLLVLSIALADCGICINAf-IAAFSSFLRywpy-gsegCQIHGF 93  chicken
AFK83788      37 ISLSIAMGCVCVGSVFGNLLVLISLVRERPlpnpaVQLIFRHLSLANFLLACIGe-PLVVISLASgkwvwgesmRLFEAF 115 Mnemiopsis leidyi
AFK83789      18 YILTSLLCMNCIFSLVGNMLVIYTFLRERPlg-apLRTILCHLAITNLMIAGIGe-PMVVISGFNlrwvfgemgRKIEAY 95  Mnemiopsis leidyi
EDO47104      10 TAYWVTMTVILTLGVIVNIAALWICFRPENrk-keITPLIANIAVADLILITCGh-TSTHLRGAAlqrn--eppCMWIAI 85  starlet sea ane...
EDO39955       4 SVFAGFVAVVFVFRIVSQIVTILIFQRNENrh-frLAPYFINTAISNLILILSSy-PLAFVASLShnlhegtfiCDFTGY 81  starlet sea ane...
Feature 1         ##  ##                                                                   ####  
2Z73_A       114 IGGIFGFMSIMTMAMISIDRYNVIGRPmaas---kkmsHRRAFIMIIFVWLWSVLWAIGPiFGWGAYTLEgvlCNCSFDY 190 Japanese flying...
2ZIY_A       113 IGGIFGFMSIMTMAMISIDRYNVIGRPmaas---kkmsHRRAFIMIIFVWLWSVLWAIGPiFGWGAYTLEgvlCNCSFDY 189 Japanese flying...
EKC20546     101 LMTFLGLMQITLLTVIAVTRYIFVVHNnn-------igPCSAKVITLLCTLYALGFSVAPlLGWSKFVLEpigTSCGPNW 173 Pacific oyster
EKC20545     107 LMTFLGLSQITLLASIAFTRYRYVVNNcs-------idTLFAKIVVIMCYLYAFIFSLAPlFGWSRPVVEpigTSCGPNW 179 Pacific oyster
AFZ78084      85 IATWSGLTSLMNLSVASYERYSTLAFLctkn---rtftRRTAACYSAAMCLYALFWSLMPlCGWSGFELEgigTSCSVRW 161 elkhorn coral
NP_001026387  94 QGFLTALASISSSAAVAWDRYHHYCTRsk-------lqWSTAISMMVFAWLFAAFWATMPlLGWGEYDYEplrTCCTLDY 166 chicken
AFK83788     116 WVTTFGLLSMMILALISLEQYSRFVRQkq-------lrTVQVAVILSGIYLLALIFGVSPlLGWCGYGPEgygVSNSLLW 188 Mnemiopsis leidyi
AFK83789      96 TVTASGLMAMSLLAFVSIERYLRVTPGqkf-----lirQTTSVRVCTLMWIYNVIYASLPfYGIAAWRGEgigISNSLSW 170 Mnemiopsis leidyi
EDO47104      86 LNGIVGIVTIVTMASINILLLRKMQSVvmv-----nlpACRMAALIACIWGYSISVMSTPlLGWGSFYPGkssANCEPEW 160 starlet sea ane...
EDO39955      82 LVSVGSAGAFVTMAVLTFEIYQHVSSEanigqaieeekQWKTFKILGAIWIYSCLCLTPPlVGWSSMTLQsdkTNCAPNW 161 starlet sea ane...
Feature 1                     ##   #                                                             
2Z73_A       191 isrdstTRSNILCMFILGFFGPILIIFFCYFNIVMSVsnhekemaamakr------------------------------ 240 Japanese flying...
2ZIY_A       190 isrdstTRSNILCMFILGFFGPILIIFFCYFNIVMSVsnhekemaamakr------------------------------ 239 Japanese flying...
EKC20546     174 vgiewsDVSFNMTLFFLCFLAPLSFILFSYIMIFWKIkkkri-------------------------------------- 215 Pacific oyster
EKC20545     180 agteprDVSYNLTIFVLCFFVPLSIITFSYFMIYLKIkrkri-------------------------------------- 221 Pacific oyster
AFZ78084     162 ksknklDMSYNLCLIIACYVLPVSVLVTSYYKCYREIakstwrakstw-------------------------------- 209 elkhorn coral
NP_001026387 167 skgdrnYITFLFALSIFNFMIPGFIMMTAYQSIHQKF------------------------------------------- 203 chicken
AFK83788     189 neltdnSASYIVTVMIVGYFFPLVIITYCYRSIYQLVqaqsnvaivrtmvsv---------------------------- 240 Mnemiopsis leidyi
AFK83789     171 dtnnkiDVAYVMVMMATGYFIPLAVITFCYNRILHFVkqavdvydeverlghnipadgmtmetqlskthastagpgvsvt 250 Mnemiopsis leidyi
EDO47104     161 tsrglgDISYNVTLLVTAFVFPMAVIIYTFYRIKRRLrneipta------------------------------------ 204 starlet sea ane...
EDO39955     162 vtqdvkGLSYLVFLTTSVFIIPMAVTGVYFYKLYRYFhntdinvts---------------------------------- 207 starlet sea ane...
Feature 1                                                                                   #   #
2Z73_A       241 ------------------------------------------lnakelrkaqagaNAEMRLAKISIVIVSQFLLSWSPYA 278 Japanese flying...
2ZIY_A       240 ------------------------------------------lnakelrkaqagaNAEMRLAKISIVIVSQFLLSWSPYA 277 Japanese flying...
EKC20546     216 --------------------------------------------------qkkneTYEIHVSTTILFMIVAFLGSWTPYA 245 Pacific oyster
EKC20545     222 --------------------------------------------------hkkndGYENHVTVTILLMIVAFLLSWSPYA 251 Pacific oyster
AFZ78084     210 --------------------------------------------grqspftkrtfVMERKMMVLFGVMTVAFLVAWTPYA 245 elkhorn coral
NP_001026387 204 -------------------------------------------------------KKSGHYKFNTGLPLKTLVICWGPYC 228 chicken
AFK83788     241 -----------------------------------------nvtslavnrnhsliVQERKLATTITFVILSFFFAWTPYV 279 Mnemiopsis leidyi
AFK83789     251 gessllnagdqegpsrggtsktgdtvtpevsvdtttkkqtstvkdsseepgnrikAAEKKISNVVAIIIVSFFISWTPYT 330 Mnemiopsis leidyi
EDO47104     205 -------------------------------------------------fpqgrrRMYTTLSRMMVGVTVAFTLSWSPDA 235 starlet sea ane...
EDO39955     208 -----------------------------------------------npsfayklEHYKVTQKMVFAAITVNAICWSPYA 240 starlet sea ane...
Feature 1                               #   #                     
2Z73_A       279 VVALLAqfgp-lewvTPYAAQLPVMFAKASAIHNPMIYSVSHpkFREAI 326 Japanese flying squid
2ZIY_A       278 VVALLAqfgp-lewvTPYAAQLPVMFAKASAIHNPMIYSVSHpkFREAI 325 Japanese flying squid
EKC20546     246 FMALYIvitk-nnqiHPLLAALPLVFAKCAPIWNPYIYFMRDtkFNHEC 293 Pacific oyster
EKC20545     252 ALAMYViitk-nstmHLALSSVPVVLAKTAPLWNPYIYFVRDrrFNKEC 299 Pacific oyster
AFZ78084     246 VVSLISmiag-pdviSDVTASIPAYFAKSSSCYNPVIYVFLYkrLRRQM 293 elkhorn coral
NP_001026387 229 LLSFYAaien-vmfiSPKYRMIPAIIAKTVPTVDSFVYALGNenYRGGI 276 chicken
AFK83788     280 LINLLNmftt-wvvkYKILATIPALFAKSSTLWWIIIYSMMDkrIKKAC 327 Mnemiopsis leidyi
AFK83789     331 IVNLLVtfdkadylaSGINATIPAFLAKTSTVWSPIIYCFMNgeVRNAN 379 Mnemiopsis leidyi
EDO47104     236 ILSVISmv-----tgRPIIHVVPSLMAKSSVIYTPIVYIAFSrsFRSAV 279 starlet sea anemone
EDO39955     241 IYSLASsikg-eelsQGAGSLIPSYFGKVSAIFNPIVYWIFNtrFRNTS 288 starlet sea anemone

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap