4M48


Conserved Protein Domain Family
SLC6sbd_SERT-like_u1

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cd11556: SLC6sbd_SERT-like_u1 
Click on image for an interactive view with Cn3D
uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain
SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized.
Statistics
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PSSM-Id: 271405
Aligned: 6 rows
Threshold Bit Score: 976.949
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Na binding site 2 [ion binding site]
Evidence:
  • Comment:based on Aquifex aeolicus LeuT (SLC6) with structure
  • Comment:One of two Na+ binding sites in Aquifex aeolicus LeuT. It binds the Na+ ion designated Na2, and appears conserved in Vibrio parahaemolyticus vSGLT and other SLC5 proteins

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #  #                                                             
4M48_A      8 RETWSGKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYGIMLAVGGIPLFYMELALGQHNRkGAITCWgRLVPLF 87  fruit fly
ACY92504   58 RETWSKKVDFLLSVIGFCIDLANVWRFPYLCYKNGGGAFLIPYIIMLVVGGIPLFYMELALGQYNRtGAITLWkKLCPLF 137 Saccoglossus kowal...
EFX70864    1 RETWNKKVDFLLSVIGFAVDLANVWRFPYYCYKNGGGAFLIPYGIMLFVGGIPLFYMELALGQFYRkGAITSWgRIVPLF 80  common water flea
Q03614     40 REQWSGKLDFLLSVVGFAVDLGNIWRFPYLCFKNGGGVFLIPYSIMVLLTGVPLFYMELCLGQYYRkGAITTWgRICPLF 119 Caenorhabditis ele...
ADM94221  123 RDKWNKKMDFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLIPYGLMLIFGGIPLFYMELALGQFIRkGAITSWgRVCPLL 202 Schistosoma mansoni
NP_523763  27 RETWSGKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYGIMLVVGGIPLFYMELALGQHNRkGAITCWgRLVPLF 106 fruit fly
Feature 1                                                                                     
4M48_A     88 KGIGYAVVLIAFYVDFYYNVIIAWSLRFFFASFTNSLPWTSCNNIWNTPNCRpf-------------------------- 141 fruit fly
ACY92504  138 KGIGWAVVMIAFYVDFYYNVIISWAFYYFFASFTTVLPWSHCDNEFNTELCFlptegpeyfvplmaynd--------sms 209 Saccoglossus kowal...
EFX70864   81 KGIGFAVVLIAFYVDFFYNVIIAWALHFFFASFTSQLPWTTCSNSWNTPQCAemnnsetims------------------ 142 common water flea
Q03614    120 KGIGYCVILTAFYVDFFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYephwsedgtamc---------------- 183 Caenorhabditis ele...
ADM94221  203 KGVGYSVVLVAFYTDWFYNMIIAWSLYYFGASFTFNLPWMSCNNAWNTENCIdfhltkndsv------------------ 264 Schistosoma mansoni
NP_523763 107 KGIGYAVVLIAFYVDFYYNVIIAWSLRFFFASFTNSLPWTSCNNIWNTPNCRpfesqnasrvpvignysdlyamgnqsll 186 fruit fly
Feature 1                                                                                     
4M48_A    142 ------------esQGFQS-----AASEYFNRYILELNRSEGIHDLGA--------IKWDMALCLLIVYLICYFSLWKGI 196 fruit fly
ACY92504  210 dlpegfgidfngttQYVYInktvsAATEYFERGVFQLHEADGVSYLGN--------IRWQLVLCLMAVYIICYFSLWKGI 281 Saccoglossus kowal...
EFX70864  143 -----dldgiselnSTQQStnftsAAWEYFVRGLLELNQSKGIDDLGRikwdialcLLVVYLICYFSLWKGISTSGKASE 217 common water flea
Q03614    184 ---rsanqsvsaekISAAEeyfykGFLGLHEANAPNSHVIRSVTDLGN--------VRWDIALSLFVVYLICYFSMWKGI 252 Caenorhabditis ele...
ADM94221  265 ----fqwknfslrnNSSIMgnitfPVEEFFSNQVLGRTKDTNVENPGK--------IQWQILLCFVAVMVICYFSLWKGI 332 Schistosoma mansoni
NP_523763 187 ynetymngssldtsAVGHVegfqsAASEYFNRYILELNRSEGIHDLGA--------IKWDMALCLLIVYLICYFSLWKGI 258 fruit fly
Feature 1                                                                                     
4M48_A    197 STSGKVVWFTALFPYAALLILLIRGLTLPGSFLGIQYYLTPNFSAIYKAEVWADAATQVFFSLGPGFGVLLAYASYNKYH 276 fruit fly
ACY92504  282 KASGKVVWFTATFPYLVLFILLIRGVTLPGARKGIAYYLIPDWGRLQSSEVWIDAATQIFFSLGPGFGVLLAFSSYNKFN 361 Saccoglossus kowal...
EFX70864  218 IPYSTVVWFTALFPYVVLFILLVRGITLPGSAEGIRYYLSPNFEALKKAEVWVDAATQVYFSLGPGFGVLLAFASYNKFH 297 common water flea
Q03614    253 HTSGKVVWFTALFPYVVLGILFIRGVTLPGWQNGIEYYLRPNFEMLKRPSVWQDAATQVFFSLGPGFGVLMAYSSYNDFH 332 Caenorhabditis ele...
ADM94221  333 HTSGKVVWFTALFPYVVLIIFLFRGITLPGSTNGIYHYIWPNIAKLKSAEPWVDAATQVFFSLGPGFGVLMAYASYNEFH 412 Schistosoma mansoni
NP_523763 259 STSGKVVWFTALFPYAVLLILLIRGLTLPGSFLGIQYYLTPNFSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYH 338 fruit fly
Feature 1                                                                                   # 
4M48_A    277 NNVYKDALLTSFINSATSFIAGFVIFSVLGYMAHtlgvrIEDVATEgPGLVFVVYPAAIATMpaSTFWALIFFMMLATLG 356 fruit fly
ACY92504  362 NNVYRDALVTSSINCLTSFGSGFVIFSVLGYMAErqgleVGEVATEgPGLVFIVYPEALSTMpgSTFWSLIFFAMLITLG 441 Saccoglossus kowal...
EFX70864  298 NNVYKDALLTSLINCSTSFLAGFVIFSVLGYMALrsgkpIDQVATEgPGLVFVVYPEAIATMpgSTFWSLLFFMMLMTLG 377 common water flea
Q03614    333 NNVYVDALFTSFINCATSFLSGFVIFSVLGYMSCksgkpIEAVAQEgPGLVFVVYPEALSTMpyAPFWSVLFFLMLMTLG 412 Caenorhabditis ele...
ADM94221  413 NNVYRDALVVASINSLTSLLSGFVVFTLLGYMAYrrnvlVLDVIKDdPVLVFSVYPEALSTLpgSTFLSICFFLMLLTLG 492 Schistosoma mansoni
NP_523763 339 NNVYKDALLTSFINSATSFIAGFVIFSVLGYMAHtlgvrIEDVATEgPGLVFVVYPAAIATMpaSTFWALIFFMMLLTLG 418 fruit fly
Feature 1      ##                                                                             
4M48_A    357 LDSSFGGSEAIITALSDef-pkIKRNRELFVAGLFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWI 435 fruit fly
ACY92504  442 LDSSFGGSEAILTGVSDefpksIKPHREIFVGCLFAFYFVIGLTMCTQGGPYVVSLLDAYVAGYSILWAVLFEAVAVSWF 521 Saccoglossus kowal...
EFX70864  378 LDSSFGGSEAIITALSDey-piIGRHREIFVGCLFSVYFVVGLASCSQGGFYFFNLLDRFAAGFSILIAVLFESIAVSWI 456 common water flea
Q03614    413 LDSSFGGSEAIITGLSDef-piLKKNREVFVGCLFAFYMVIGIAMCTEGGILIMEWLIIYGTTWGLLIAVFCEAMVIAYI 491 Caenorhabditis ele...
ADM94221  493 LDSSFGGSEAVITALSDey-plLANHRELFVLGLFTFYIGIGALESTQGGIYWFHLFERTCVEYPILLAVLCETVCIAWI 571 Schistosoma mansoni
NP_523763 419 LDSSFGGSEAIITALSDef-pkIKRNRELFVAGLFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWI 497 fruit fly
Feature 1                                                                                     
4M48_A    436 YGTNRFSEDIRDMIGFPPGRYWQVCWRFVAPIFLLFITVYLLIGYEPLTYADYVYPSWANALGWCIAGSSVVMIPAVAIF 515 fruit fly
ACY92504  522 YGYKRFCGDIAEMLGSGPGPYWRICWPYICPIFLMFNIAFGLYGYKPLTYDDYVYPPWANAVGWMLAISSMSCIPIFAVY 601 Saccoglossus kowal...
EFX70864  457 YGIDRFCQDIKAMTGFCPGIYWRVCWKFIAPIFLMGIIGYGLWDYKPLEYDGYIYPTWANVLGWCIAGSSIAMIPTVAIY 536 common water flea
Q03614    492 YGLRQFVHDVKEMMGFRPGNYWKFCWSCAAPFILLSMITSNFINYQALTYQDYTYPTAANVIGIIFALSGASFIPLVGIY 571 Caenorhabditis ele...
ADM94221  572 YGVDRFRQNIKQMLGFQPGIFWKICWKFIAPLFILFNITYGLSNYQPLQLGDYTYPLWANILGGIFSGSAILTIPIVAII 651 Schistosoma mansoni
NP_523763 498 YGTNRFSEDIRDMIGFPPGRYWQVCWRFVAPIFLLFITVYGLIGYEPLTYADYVYPSWANALGWCIAGSSVVMIPAVAIF 577 fruit fly
Feature 1                         
4M48_A    516 KLLSTPGsLRQRFTILTTPW 535 fruit fly
ACY92504  602 ILITTPGtLKERLVKATKTP 621 Saccoglossus kowalevskii
EFX70864  537 QILITPGtFCQRMKILVTPY 556 common water flea
Q03614    572 KFVNARGnTISEKWQRVTMP 591 Caenorhabditis elegans
ADM94221  652 QILRTEGtFSERIKKLIKPD 671 Schistosoma mansoni
NP_523763 578 KLLSTPGsLRQRFTILTTPW 597 fruit fly

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