2J3W,1H3Q


Conserved Protein Domain Family
TRAPPC2_sedlin

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cd14825: TRAPPC2_sedlin 
Click on image for an interactive view with Cn3D
Trafficking protein particle complex subunit 2
Trafficking protein particle complex subunit 2 (TRAPPC2), also known as Sedlin (SEDL) or TRS20, has been identified as a component of the transport protein particle (TRAPP), required for tethering endoplasmic reticulum (ER)-derived vesicles to Golgi membranes and for Golgi traffic. In humans, deletions or point mutations in the SEDL gene cause the genetic disease spondyloepiphyseal dysplasia tarda (SEDT), an X-linked skeletal disorder.
Statistics
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PSSM-Id: 341429
Aligned: 64 rows
Threshold Bit Score: 109.927
Created: 4-Dec-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
TRAPPC5TRAPPC3
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:TRAPPC5 interface [polypeptide binding site]
Evidence:
  • Structure:2J3W, Mus musculus Sedlin-Trafficking protein particle complex 5 (TRAPPC5) complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
2J3W_A       6 SFYFVIVGhhDNPVFEMEFlppgka------------------------------------------------------- 30   house mouse
ADK66885     3 AHKFVVVGtnDNPIYELDIaphp--------------------------------------------------------- 25   Mastigamoeba bal...
EAL48836     3 NTYFVIIGsnDRLLYEYPKesamky------------------------------------------------------- 27   Entamoeba histol...
EME29062     2 AITFVIVSpqDQLLYEATFppvsq-------------------------------------------------------- 25   Galdieria sulphu...
EGG02140     6 SLNVVIVGpnDKPIYQIDLitsktsisssvppsklknhliyslfenlnpntittttttatteskeselkelkgnevsnpl 85   Melampsora laric...
EFP83092    11 SYYFVIVGvlDNPIYEAHLttsktsasssvppaplsahpsysllqelsgplttsvtgvgggeekvekqkegpgqedqsai 90   Puccinia gramini...
EPY39980     3 LSHFFIIGpnDSVIYEFSGddg---------------------------------------------------------- 24   Angomonas deanei
EPY33666     3 FSHFFVVGphDSVIYEYGGsds---------------------------------------------------------- 24   Strigomonas culicis
EDQ87337   903 NYYLAIIGadDKPLYESSFgilnesne----------------------------------------------------- 929  Monosiga brevico...
BAM79423     5 LYYFVIVGrdDRVLYDLLYpaslseldwrtsselss--------------------------------------paergd 46   Cyanidioschyzon ...
Feature 1                                  ##                        ###  #                    
2J3W_A      31 ----eskddhRHLNQFIAHAALDLVDENMWlsnnmYLKTVDKFn---eWFVSAFVTAg-HMRFIMLHDv--rQEDGIKNF 100  house mouse
ADK66885    26 -------kegPHVTQFMMHSALDLVDEAKSrnkdmYLKTVDHMg---kYSILAWVTAg-NVKFLLSSEk--pDTEATRNF 92   Mastigamoeba bal...
EAL48836    28 -----asdneYVLNQFVILSALDFIEEKKKttpkmYFKSIDVYg---sHHLSAFVTSg-NIKFVLMSTs---KTDDTKGF 95   Entamoeba histol...
EME29062    26 ------tdetAHLREFILFASLDILEQVVWstrdfYLKAIDRFn---dQIIYGLVTAs-SVRLLLVSDg--kSEEAVKNF 93   Galdieria sulphu...
EGG02140    86 syskknsnqgRDVLELIVNASLDDLNHLIWnsksmYLKNLDQFh---qWSISALVPAg-GIRLILLHEi--kNDDGIRHF 159  Melampsora laric...
EFP83092    91 syarkdsergRHVVQLVSHAALDTIDALIWaeksmYLKQIDRFh---eWSVSAWIPPg-GMRFVLLHEik-nNDDGIKMF 165  Puccinia gramini...
EPY39980    25 -------dsvQVLRQFFTYASLDVIDDVMWtkgdfYLNKVDHSs---eLFISAYIGLa-PIKLVLMHDa--dQSDTVRQF 91   Angomonas deanei
EPY33666    25 -------dgvQLMRQFFAYSSLDIIDDTVWakgdfYLNRIDRPss-eqLYISAYVGLs-PVKLILMHDn--dQGDNVRLF 93   Strigomonas culicis
EDQ87337   930 --dpekraerVLSYQQVAFAALDSIDDEAGrn-psTFIKVDHRfdewsMQVAACVTAt-NIRIVLLYDs--rSDEGVKAF 1003 Monosiga brevico...
BAM79423    47 fephhfipsiQVLLQFVAYSALDHIEEKYWltsarSLKHIFRFr---dWSASVQLTPnaATRFVLVHGasddASRNVRAF 123  Cyanidioschyzon ...
Feature 1          #   #   #                              
2J3W_A     101 FTDVYDLYIKFAMNPFye-pNSPIRs--SAFDRKVQFLGKKHL 140  house mouse
ADK66885    93 FTDAYEAYLKVLLCPFyq-pGTPITs--SAFDARIKKMSQKYF 132  Mastigamoeba balamuthi
EAL48836    96 FTAVYEDYVKIILNPFye-lQTPIEs--EGLNTHIKQLLKQYK 135  Entamoeba histolytica HM-1:IMSS
EME29062    94 LQEAYELYVKLALNPFfe-pCKPILs--TSFHERIQKLGKKYF 133  Galdieria sulphuraria
EGG02140   160 FLEVWELIVNIQLSPFyk-lNSTIRs--NQFDTKLKLSARKHL 199  Melampsora larici-populina 98AG31
EFP83092   166 FLEAWESFVRHQLSPFye-iNSRIAs--PQLDTRIRTSARKFL 205  Puccinia graminis f. sp. tritici CRL 75-36-700-3
EPY39980    92 FSEVYEVVVKYLLNPFse-pNKDIHs--PFVHESIVALHKKYS 131  Angomonas deanei
EPY33666    94 FTEAYNIIAKYLINPFse-pAKDVSg--SNFHEALISIYKKYG 133  Strigomonas culicis
EDQ87337  1004 LQEIHELYVKDASLPS----MCSLSepqFTFDRHAQPASSTWY 1042 Monosiga brevicollis MX1
BAM79423   124 LHAVYEAYVPHVVCNPfqeeDAPITs--KRFHEVAKNLAKRYF 164  Cyanidioschyzon merolae strain 10D

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