Conserved Protein Domain Family
rpoC1

?
PRK02625: rpoC1 
DNA-directed RNA polymerase subunit gamma; Provisional
Statistics
?
PSSM-Id: 235055
Aligned: 39 rows
Threshold Bit Score: 1280.07
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
148240397   4 SNLRTENHFDYVKITLASPDRVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVR 83 
86605129    1 -MAKTEQRFDYVKIGLASPERIIEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPVKDWECHCGKYKRVR 79 
86609872    1 -MAKTEQRFDYVKIGLASPERIMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR 79 
81300332    1 -MAKQEQRFDYVKIALASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPAKDWECHCGKYKRVR 79 
17229087    1 MRPAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR 80 
186685077   1 MRPAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR 80 
113476514   1 -MPKLEQRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR 79 
37523846    1 -MPRMEQRFDYIKISIASPERVMAWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPSKDWECYCGKYKRVR 79 
220905929   1 -MPKLEQRFDYVKIGLASPDRIRLWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR 79 
22298183    1 -MPRLEQRFDYVKVSLASPERIIQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR 79 
148240397  84 HRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKDLKYKQ 163
86605129   80 HRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSHIATLLDMPLRDVEQVVYFNAYVVVDPGNAPNLSYKQ 159
86609872   80 HRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSHIATLLDMPLRDVEQVVYFNAYVVVDPGNAQNLSYKQ 159
81300332   80 HRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKGIPSYIAILLDMPLRDVEQIVYFNSYVVLNPGNHSELQYKQ 159
17229087   81 HRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGIPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQ 160
186685077  81 HRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGIPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQ 160
113476514  80 HRGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMAILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQ 159
37523846   80 HRGIVCERCGVEVTESKVRRHRMGYIKLAAPVTHVWYLKGIPSYISTLLDMPLRDVEQVVYFNAYVVLNPGNAENLYYKQ 159
220905929  80 HRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYMATLLDMPLRDVEQIVYFNAYVVLNPGNHESLTYKQ 159
22298183   80 HRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYMAILLDMPLRDVEQIVYFNSYVVLDPGNHPGLSYKQ 159
148240397 164 LLTEDEWLEIEDEIYAEDSEIENEPv-VGIGAEALKQLLEDLTLDEVAEQLREEIAGSKGQKRAKLIKRLRVIDNFIATN 242
86605129  160 LLTEDQYLEIEDQMYEEGSELQLPEnwAMIGAEAIERLLKDIDLEKEAEQLREEIASARGQKRARLIKRLRVIDNFIATG 239
86609872  160 LLTEDQFLEIEDQMYEEGSELQLPEnwAMIGAEAIERLLKDIDLEKEAEQLREEITSARGQKRARLIKRLRVIDNFIATG 239
81300332  160 LLNEDQWMEIEDQIYAEESDLEGIE--VGIGAEALQQLLQDLNLNEESEKLRQEIAESKGQKRAKLIKRLRVIDNFIGTE 237
17229087  161 LLSEDQWLEIEDQIYSEDSQLQGVE--VGIGAEALLRLLADINLEQEAESLREEIGSAKGQKRAKLIKRLRVIDNFIATG 238
186685077 161 LLSEDQWLEIEDQIYSEDSVLQGVE--VGIGAEALLRLLADINLEQEAESLREEIGNAKGQKRAKLIKRLRVIDNFIATG 238
113476514 160 LLSEDVWLEIEDQIYSEDSEIVGVD--VGIGAEALQVLLANLDLEVEAEKLREEIANSKGQKRAKLIKRLRVIDNFIATG 237
37523846  160 LLTEDQYIEVEDQIFAEDSSLELPEgwAKMGAEAIHELLAAIEMESEAERLRADLGESKGQKRTKLIKRLRVLDNFIATG 239
220905929 160 LLSEDQWIEIEDQIYSEDSQLVDIE--VGIGAEAVQRLLQDLELETEAEALRSEIDVSKGQKRAKLIKRLRVIDNFIATG 237
22298183  160 LLSEDQWQDIEEEIYREDSELEGVE--VGIGAEAIQRLLRDLDLQAEADQLRQEILNSKGQKRAKLIKRLRVIDNFIATG 237
148240397 243 ARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 322
86605129  240 ARPEWMVLRVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEIMAPEIIVRNEKRMLQEAVDALIDNGR 319
86609872  240 SRPEWMVLRVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEIMAPEIIVRNEKRMLQEAVDALIDNGR 319
81300332  238 SRPEWMVLNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 317
17229087  239 SKPEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 318
186685077 239 SKPEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 318
113476514 238 SRPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRMLQEAVDALIDNGR 317
37523846  240 SRPEWMVLTAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 319
220905929 238 SRPDWMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 317
22298183  238 AKPEWMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGR 317
148240397 323 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIV 402
86605129  320 RGRMVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLRMHQCGLPKEMAIELFQPFVIHKLIKRGIV 399
86609872  320 RGRVVAGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLRMHQCGLPKEMAIELFQPFVIHKLIKRGIV 399
81300332  318 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKIHQCGLPREMAIELFQPFVIHRLIKNHSI 397
17229087  319 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMV 398
186685077 319 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMV 398
113476514 318 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLAINQCGLPREMAIELFQPFVIHRLIRQGLV 397
37523846  320 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKEMAIELFQPFVIHKLIQRGLV 399
220905929 318 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPREMAIELFQPFVIHRLIRQGLV 397
22298183  318 RGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLQMHQCGLPREMAIELFQPFVIHRLIRQQIV 397
148240397 403 NNIKAAKKLIQRADDEVMQVLQEVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVHVP 482
86605129  400 NNIKAAKKLIQSNDPQVWDVLEDVIDGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 479
86609872  400 NNIKAAKKMIQSNDPQIWDVLEEVIDGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 479
81300332  398 NNIKQAKKLIQKNDPLIWDVLEEVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 477
17229087  399 NNIKAAKKLISRNDPSVWDVLEEVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 478
186685077 399 NNIKAAKKLISRNDPSVWDVLEEVIEGHPVMLNRAPTLHRLGIQSFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 478
113476514 398 NNIKAAKKLIQKGDPNVWDVLEEVIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 477
37523846  400 NNIKAAKKMIQRNDARIWSVLDEVITGHPVLLNRAPTLHRLGIQAFEPILVSGRAIQLHPLVCTAFNADFDGDQMAVHVP 479
220905929 398 NNIKAAKRLIQRNDPIIWEVLEEVIDGHPVLLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVP 477
22298183  398 NNIKAAKRMIQRNDPQIWDVLEEVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 477
148240397 483 LAIEAQTEARMLMLASNNILSPATGEPIITPSQDMVLGAYYLTALQPDVQPvdfgDRSRTFSDLEDVIHAFEDKRLGLHD 562
86605129  480 LSLEAQAEARLLMLATNNILSPATGAPIITPSQDMVLGCYYLTADNPHAPD----LGDRYFASLEDALIAYDRGVIGLHS 555
86609872  480 LSLEAQAEARLLMLATNNILSPATGAPIITPSQDMVLGCYYLTADNPHAPD----IGDRFFASLEDALIAYDRGAIGLHS 555
81300332  478 LSIEAQAEARMLMLASGNILSPATGQPIVTPSQDMVLGCYYLTAENPGAQK----GAGRYFANLEDAIRAFEQGSVDLHA 553
17229087  479 LSLESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPGATK----GAGKYFASLDDVIMAFQQEQIDLHA 554
186685077 479 LSLESQAEARLLMLASNNILSPATGKPIITPSQDMVLGAYYLTAENPGATK----GAGNYFSSLEDVIMAFQQDQIDLHA 554
113476514 478 LSLESQAEARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQG----SKALYFANPDDVILAYQQDKIDLHT 553
37523846  480 LSLESQAEARLLMLASNNVLSPATGRPIITPTQDMVLGCYYLTVDNPDATK----GSGKYFGSSEDAVIAYNQGMIDLHA 555
220905929 478 LSIESQAEARLLMLASNNILSPATGKPIVTPSQDMVLGCYYLTAENPKSQQ----GEGTYFASMNDVVMAYEQGQVELHA 553
22298183  478 LSIEAQAEARMLMLASNNILSPATGKPIITPSQDMVLGCYYLTAENPKLPD----YSDRYYANFQDVVMAYEQGHLPLHA 553
148240397 563 WVWVRFNG--EVEDDDEREEPVSSETL-------------------------------SDGTRFEQWTYRRDRfDDDGAL 609
86605129  556 KIWVRYSGpmELGKEEKESEPQIIEE--------------------------------PGGTRLKITNYRRIReDRDGNV 603
86609872  556 KVWVRYHGpmELGKGEKESEPQIIEE--------------------------------AGGIRLKITNYRRIReDQNGNV 603
81300332  554 WVWVRFDG--EVESEGESDEPESVVAA-------------------------------DDGTVTKTYRFRRIReTEDGQR 600
17229087  555 YVYVRFDG--DVESDQPDTEPVKVTTN-------------------------------EDGSRTVLYKYRRVReDAQGNV 601
186685077 555 YIYVRFDG--EIESDQPDTEPVKVTEN-------------------------------EDGTRTLLYKFRRVRqDAKGNV 601
113476514 554 YVYLRLAPdvEIETDKPEEIPPDIQQIsdelvvhtywmpldskvlpntlgelkseqkcENGDLVKAYNLYRIHySQEGEI 633
37523846  556 KIWLRFEG--EVETDNPED--------------------------------------------------LRVRrDEQGNA 583
220905929 554 FIWVRYDG--EVEDDDKGEPEIQTS---------------------------------GDGLVTHLYPSKRLRfDQDGKL 598
22298183  554 FVWVRYDG--EVDDGDTSEPQITT--Y-------------------------------EDGSRLLEYALRRVKeDANGQR 598
148240397 610 -----------------ISRYILTTVGRVVMNHTIIDAVAA 633
86605129  604 -----------------ISQYIRTTAGRIIFNKTVQDILSA 627
86609872  604 -----------------ISQYIRTTPGRIIFNKTVQDILSA 627
81300332  601 -----------------LSQYVKTTPGRILFNNTVQTALIH 624
17229087  602 -----------------ISQYIYTTPGRVIYNKAIQEALAS 625
186685077 602 -----------------LSQYIYTTPGRVIYNNAIQEALAS 625
113476514 634 kkvyiksrqvrqsnglvTTQFVVTTPGRIIINQTIQSVL-- 672
37523846  584 -----------------LSQFVRTTVGRIIFNQVIQETLVA 607
220905929 599 -----------------ISQYIRTTPGRIIYNKTIQESLAI 622
22298183  599 -----------------ISQYIRTTPGRIIYNQTIQEALAS 622
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap