Conserved Protein Domain Family
penumbra_like_LEL

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cd03158: penumbra_like_LEL 
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Statistics
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PSSM-Id: 239411
Aligned: 21 rows
Threshold Bit Score: 159.391
Created: 7-Nov-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
dimer interface
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimeric assembly observed in the crystal is predicted to resemble quaternary structure of intact CD81 at the cell surface

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       #    #   # ##  #              #  ##  ##                                        
CAI20758   114 FVFSDKARGKVTDMFDNAIKHYRDD-LDLQNLIDYGQKQFNCCGGISFMDWSKNm--YFNCSDDnpsreRCSVPFSCCLH 190  zebrafish
XP_683117  250 FFYSEQTRDALGEFVKKAIVHYRDD-LDLQNLMDYIQKEFKCCGWTNYTDWSWNp--YFNCSSSnpsneRCSVPFSCCTP 326  zebrafish
AAO91940   116 FVFSDKARGKVSEIINNAIVHYRDD-LDLQNLIDFGQKKFSCCGGISYKDWSQNm--YFNCSEDnpsreRCSVPYSCCLP 192  human
AAH72789   115 FIFSDKARGKVSEIISNAIEHYRDD-LDLQNLIDFGQKEFSCCGGISYKDWSQNm--YFNCSSEnrsqeRCSVPYSCCLH 191  African clawed frog
CAF97225   110 FIFADKARNKVTEIINNAITHYRDD-IDLQNLIDFGQKEFSCCGGVAFTDWSNNm--YFNCSKQnpsteRCSVPFSCCIV 186  Tetraodon nigrov...
XP_794304  108 IVFKTKAKELVSSGFSSALENYYDD-PDIHFAVDAVQQKLECCGGFDFNDWDKNi--YFACQDPg----SCGVPFSCCVS 180  purple urchin
NP_525054  144 FVCPQYMNTFLEKQFTHKIIHSYRDdPDLQNFIDFAQQEFKCCGLSNSGYQDWSkneYFNCSSPsv--eKCGVPYSCCIN 221  fruit fly
AAF90139   115 VCPQYMNTFLEKQFTHKIIHSYRDD-PDLQNFIDFAQQEFKCCGLSNSGYQDWSkneYFNCSSPsv--eKCGVPYSCCIN 191  fruit fly
EAA03776   114 VFPHKVNAVLEESFTDKIITTYRDD-PDLQNLIDFAQQEFHCCGLSNEGYLDWGkneYFNCSSPsv--eKCGVPYSCCIN 190  Anopheles gambia...
EAL32627   131 FVFPQLMNTFLEKEFTETIIHSYRDdPDLQNFVDFAQQEFKCCGLSNAGYQDWGkneYFNCSSPsv--eRCGVPYSCCIN 208  Drosophila pseud...
Feature 1                                                      
CAI20758   191 ake--etIINTMCGHGmqalny--laasaFINTNGCIDILVNWIHSNL 234  zebrafish
XP_683117  327 lpr--etVINSMCGFGiqtqnh--lnatkSIYSVGCADRAVIWIESHL 370  zebrafish
AAO91940   193 tpd--qaVINTMCGQGmqafdy--leaskVIYTNGCIDKLVNWIHSNL 236  human
AAH72789   192 deg--eaVINTLCGQGmqeldy--leageFIHTNGCIDRLVNWIHSNL 235  African clawed frog
CAF97225   187 tnt--qmVINTKCGQGmqlley--teaaaSIHTNGCIDKLVNWIHSNM 230  Tetraodon nigroviridis
XP_794304  181 tke--dmVMNTQCGVNvregdphpfavddTIYIRGCTDALLVWFQDHL 226  purple urchin
NP_525054  222 atdissgLVNIMCGYGvqnapv--peatkLIWTSGCIEIVRVWAEHNL 267  fruit fly
AAF90139   192 atdissgLVNIMCGYGvqnapv--peatkLIWTSGCIEIVRVWAEHNL 237  fruit fly
EAA03776   191 atdissgLVNIMCGYHiqqqsv--aaaskKIWTNGCIEIVRVWAERNL 236  Anopheles gambiae str. PEST
EAL32627   209 atdissgLVNIMCGYGvqehtv--vaaskLIWTSACIETGKLVKLDSA 254  Drosophila pseudoobscura

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