1R44


Conserved Protein Domain Family
D-Ala-D-Ala_dipeptidase_VanX

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cd14817: D-Ala-D-Ala_dipeptidase_VanX 
Click on image for an interactive view with Cn3D
D-Ala-D-Ala dipeptidase VanX
D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. It belongs in the MEROPS peptidase family M15, subfamily D.
Statistics
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PSSM-Id: 350616
Aligned: 121 rows
Threshold Bit Score: 247.791
Created: 21-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active siteZn binding site
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 5 residue positions
Conserved feature residue pattern:R H D [ED] HClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                            #           
1R44_A         3 IGFTFLDEIVHGVRWDAKYATWDNFTGKpvdGYEVNRIVGTYELAESLLKAKELAATQGYGLLLWDGYRpKRAVNCFMQW 82  Enterococcus fa...
WP_008899481  52 TDIVDVLTVTSKVQVSMAYAGDSNFTGKavpGYQANSCYLEKNAAQALAKVAQQAERLGYQLQLLDCYQpQRASNHFMLW 131 Rheinheimera sp...
WP_018265335  28 PGFVRLADLAPQIVQDMRYAGADNFTGRpvpGYKAAQCWLREDAAKALIAVQGEAKRQGFELILYDCYRpRRAVAAFIDW 107 Methylosinus sp...
WP_020176303  31 KGFVRLADIAPQIHQDMRYAGPDNFIGRpvpGYAAPRCWLRTEAAQALAAAQEEAAREGVRLVVYDCYRpPAATKAFIAW 110 Methyloferula s...
EYT53665      89 DFVDARELEPRIEVELRYAGTRNFTGRVvdgYETDDRAILQRDAAVALAEVQRDLAAEGLGLRVYDAYRpTRAVRFFMDW 168 Leucobacter sp....
WP_057662870  34 AGLVDVAGLAPDITVDMRYLGSNNFTGApvpGYQANRCYLRAPAAQALARVQQAVAQQGYRLQVFDCYRpVRAVQAFVRW 113 Stenotrophomona...
ALT00462      23 EDFVEMNQALPDAIYDIRYYTDNNFVGEpveGYLEPKCILQQQAAKALQEVATKASEQGLKLKIFDCYRpQRSVAHFMRW 102 Alteromonadacea...
KZY48546      36 SEFVDVGALLPNAVLDIRYFGHHNFVGKpvdGYNAPKCLLHSTAAAALKNVQVAAQTQGLSLKIFDCYRpQRAVDHFVRW 115 Pseudoalteromon...
SDZ16511      65 AGMVEIRSLVPDIDLEIRYAGSDNFVGRpvaGYLGAGCYLHRPVAQALARVERGLRAQGLRLRIYDCYRpVRAVRDFVAW 144 Lysobacter sp. ...
SIR11951      47 AGLVDVRGFVPDAQLDIRYATTHNFVGAridGYNAPRCWLHRPAAEALAKVAMDVRGQGLRLHIYDCYRpARAVAHFMRW 126 Luteimonas sp. UM1
Feature 1                                         #      #                                       
1R44_A        83 AaqpennltkesYYPNIDrTEMISKGYVASKSSHSRGSAIDLTLYrld---tgeLVPMGSRFDFMDERSHHAangISCNE 159 Enterococcus fa...
WP_008899481 132 Ltnaad-qstkaEFYPNLeKNQLTPDYIAAHSGHSRASTVDLTLLrknaagqwqQLDMGGTYDLFDPVSHSDsnaINSQQ 210 Rheinheimera sp...
WP_018265335 108 Akgpde-smkaqYYPHENkRDLFARGYIAEKSSHSTGLAVDLGVLgw------dFGTPFDYFDERSWTANKD---VSAQA 177 Methylosinus sp...
WP_020176303 111 Sqdead--qrmkEAYYPRvEKAKLFDLGYIAKASTHTTGCAVDLAf-------eGLDFGTPFDLFDDKSTTAdpsIKGDA 181 Methyloferula s...
EYT53665     169 Artddd-streeYYPDFEkPQLFELGYIAERSKHSLGGTVDLTLLdla---sgeVLDMGGPFDFFGERSHYDaagLTAEQ 244 Leucobacter sp....
WP_057662870 114 Ahapad-paakaAYFPQIdKPDLLNGYISATSGHSLGHTVDLTLLdcrs-gacqPLDMGTPFDFFDPRANLGhpaVTPAQ 191 Stenotrophomona...
ALT00462     103 Aqdlsd-ihtkaDYYPNLpKDKLVGEYIAERSGHSRGATVDLTLArqdsegnwqELDMASPFDMFDPLSNTAnptISAEQ 181 Alteromonadacea...
KZY48546     116 Vndled-trtkaEFYPNLgKDKLLGDYIAAKSGHSRGSTIDLTLVdtk----gkELDMGSPFDMFDTLSNTDdprISAEQ 190 Pseudoalteromon...
SDZ16511     145 Aadpdd-qktkpRYYPALaKSRLLGDYISPTSGHSRGATLDLTLLersg-egyaPLDMGTGFDFFDELAHTDapgASLAQ 222 Lysobacter sp. ...
SIR11951     127 Andldd-qrtktEFYPRLeKSTLVPGYIAERSGHSRGATIDLTLSrcdandvcvTLDMGTTYDLFDARANTDnadVTATQ 205 Luteimonas sp. UM1
Feature 1                             #  #                 
1R44_A       160 AQNRRRLRSIMENSGFEAYSLEWWHYVLRDEPypnSYFDFPV 201 Enterococcus faecium
WP_008899481 211 KANRLLLKDLMQQQGFFPYAMEWWHFTLSNEKysgTYFDFEI 252 Rheinheimera sp. A13L
WP_018265335 178 QEHRRRLETLMRIHGFHNLPTEWWHFAFAGAGeapSYDVEIE 219 Methylosinus sp. LW4
WP_020176303 182 RHNRDRLVALMTKHGFENLPNEWWHFTYKGVSdpkPVDFEVE 223 Methyloferula stellata
EYT53665     245 SGNRTRLRDAMIARGFEPYELEWWHFSYPLGDdarPFDAPVR 286 Leucobacter sp. UCD-THU
WP_057662870 192 VANRNLLQQAMQAQGFEPYAMEWWHFSHPEQRseaTRLDVPV 233 Stenotrophomonas koreensis
ALT00462     182 AANRQLLKELMESAGFSNYAMEWWHYSLVPQPypdTYFDFPV 223 Alteromonadaceae bacterium X13M-12
KZY48546     191 KANRYKLKSLMTEAGFAPYSMEWWHFTYQPQAypaTYFDFVV 232 Pseudoalteromonas sp. se3
SDZ16511     223 RGHRQRLRAAMQAEGFENYPLEWWHYTFKQEPtpgVAFDFPV 264 Lysobacter sp. yr284
SIR11951     206 RANRDLLRDAMQGRGFANYPMEWWHFTFKPEPtpdTFFDIPL 247 Luteimonas sp. UM1

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