1T2W,1T2O,2KID,1T2P,1IJA,2MLM,2KW8,4O8L,4O8T,4TQX,3RCC,3FN6,3FN7,3FN5


Conserved Protein Domain Family
Sortase_A

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cd06165: Sortase_A 
Click on image for an interactive view with Cn3D
Sortase domain found in class A sortases
Class A sortases are membrane-bound cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). They perform a housekeeping role in the cell as members of this group are capable of anchoring a large number of functionally distinct surface proteins containing a cell wall sorting signal to an amino group located on the bacterial cell wall. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall-sorting signal (Class A sortases recognize a canonical LPXTG motif, X can be any amino acid), and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical sortase A protein from Staphylococcus aureus (named Sa-SrtA) cleaves the amide bond between threonine and glycine residues of the canonical LPXTG motif in a wide range of protein substrates with diverse functions that can promote bacterial adhesion, nutrient acquisition, host cell invasion, and immune evasion. Next, it catalyzes a transpeptidation reaction by which the proteins are covalently linked to the peptidoglycan precursor lipid II. SrtA is therefore affects the ability of a pathogen to establish successful infection. SrtA contains an N-terminal hydrophobic segment, a linker region and an extra-cellular C-terminal catalytic domain. The hydrophobic segment functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring. The catalytic domain contains the catalytic TLXTC signature sequence where X is usually a valine, isoleucine or a threonine. The gene encoding SrtA is generally not located in the same gene cluster as its substrates while the gene encoding SrtB is usually clustered in the same locus as its substrate.
Statistics
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PSSM-Id: 320680
Aligned: 189 rows
Threshold Bit Score: 96.4181
Created: 14-May-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic site [active site]
Evidence:
  • Comment:The SrtA enzymes recognize a conserved five amino acid sequence (LPXTG) at the C-terminus of their protein substrates and cleave the amide bond between the threonine and glycine residues using a highly-conserved cysteine residue in the active site. Two other active site residues have been identified as essential for optimal enzyme activity, a His side-chain which serves as a general base and an Arg side-chain which stabilises the oxoanion intermediate formed during the reaction.
  • Comment:The catalytic triad is formed by His, Cys, and Arg. The sulfhydryl of Cys is ionized by His and the resultant thiolate attacks the LPXTG peptide.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           #                            
1T2W_A         9 SKVAGYIEIPdaDIKEPVYPGpATPEQLNrGVSFAEenes-lddQNISIAGHTFidr--pnyQFTNLKAAk-kGSMVYFK 84  Staphylococcus ...
WP_022530123  86 QWAIGVLSIPsvAVDQPVLAG-MTETNLLnGVATYNaker-mgqGNFILSSHNMvga---emLLNPISGVq-aGAPIYLT 159 Lactobacillus s...
WP_027827839  85 QQAIGLVCIPaaKIILPIFPG-TSDFALLnGVGTYWrnqr-lgqGNYVVAAHNLsgq---kaLLNPMTAVk-pGQHIYLT 158 Lactobacillus h...
WP_052725283  98 KSMIGQLTIPsvHINLPVFSG-MSNAALLnGVGTFSkkrs-mgqGNFVMMAHNLpaqy-sdaLLQPLSQIk-pKAKIRIT 173 Lactobacillus s...
KUJ25703      88 LDVLGAVAIPdaNLNTAVIKG-MSDVAMVsGAGTMFpdqv-mgqGNYTLASHHIgyg--tdiLLNNISDSvtvGDKIYLT 163 Streptomyces al...
WP_016897831  88 LDILGAVAIPdaNLNTTVIKG-LSDAAMVsGAGTMFpdqv-mgqGNYALASHHIgyg--tdiLLNNISDSvtvGDKIYLT 163 Aerococcus viri...
KXB37331      60 LDIKGALVYPnaHIYGPLVEG-LTEENMHyGIATFYpdeqilgeGNYPVTSHNIdyfk-kgvLLSPIVTEakiGDLVYVT 137 Aerococcus chri...
AMB94746       2 IPVIGAVAYPdaDIYVPIFDG-LTEENMLhGASTFFpgeqklgqGNYPITSHNMnyfg-enlLLTPILDKtkmGDSIYVT 79  Aerococcus sang...
AMB94216      85 VNVIGALAMPdaDVKVSIMKG-LSEDVLLsGAGTFYpeqk-mgeGNYPLASHNMnvvq-kglLLSPIVDKaqvGQKIYMT 161 Aerococcus sang...
ERJ82741      99 NNAIGAIHIPnqKIRLAVLHG-VNDTIMFaGAGTLSpyqv-mgqNNFPLISHKLylsqdqnlLFNQIENVe-mGSIIRLT 175 Peptostreptococ...
Feature 1                                                  #            #      
1T2W_A        85 VgNETRKYKMTSIRDVKPtdvGVLDEQkg----kDKQLTLITADdynektgvWEKRKIFVAT 142 Staphylococcus aureus
WP_022530123 160 DwRRVYVYKATVNQVVDEhaiQYLAQPrt----gQPVVTLMRCSgg----ydTPYRRIVQGR 213 Lactobacillus shenzhenensis
WP_027827839 159 DfVHLATYTAVSNRVVTDrhsELLAVPgp---hqPAEVTLFRCVgg----igTPWREVLQGR 213 Lactobacillus harbinensis
WP_052725283 174 DfNNVYTYEASYKNIVDSsniKLLGQTh------KSIVTLFRCVge----hgTNNRLIVQGN 225 Lactobacillus sp. Bin4N
KUJ25703     164 DlTNVYVYETFFVEAVNPdqvQYISQEvt----gNPIITLMTCTa------dLTQRWIVQGN 215 Streptomyces alboniger
WP_016897831 164 DlTNVYVYETFFVEAVNPdqvQYISQEvt----gNPIITLMTCTa------dLTQRWIVQGN 215 Aerococcus viridans
KXB37331     138 DlQNIYTFKVDFNETVPEtrvDLVETNw-----dHPILTMMTCSkpv---qpVHTRKIVQAS 191 Aerococcus christensenii
AMB94746      80 DlDKIYRFEVDFNEVVPEtrvDLVDPKt-----dQAMLTLMTCTkal---gdDPNRKIVQAK 133 Aerococcus sanguinicola
AMB94216     162 DlEKIYIYDTFFVEDVPPtrvDLVDPNlldpetqKPIITLMTCTd------dATERRIVQGR 217 Aerococcus sanguinicola
ERJ82741     176 DlETIWEYKAYDFIKIDEknvDAVDPFktg-pngKPIISLVTCVay-----gEPSRYVLYGE 231 Peptostreptococcaceae bacterium o...

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