Conserved Protein Domain Family
LIM4_Paxillin_like

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cd09339: LIM4_Paxillin_like 
The fourth LIM domain of the Paxillin-like protein family.
The fourth LIM domain of the Paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188725
Aligned: 17 rows
Threshold Bit Score: 73.5273
Created: 18-May-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                      #  #  #  #                  #  # 
XP_002127320 402 CSGCQKPItgr------citAMGKKFHPEHFVCAFCLKQLNk-gTFKEQNDKPYCHQCF 453 Ciona intestinalis
ACE75737     393 CAYCGKPVsgr------citAMFRKFHPDHFMCTYCQKQLSk-gTFKEENDKPYCHSCF 444 medicinal leech
EFA85003     469 CGHCEKPIlsgk-----civMGTKRFHPEHFFCSFCKTALSg-vGYKRQGDKPYCQDCH 521 Polysphondylium pallidum PN500
XP_001900435 346 CATCQKPIngr------cvsAVGQKFHPEHFCCSYCRKQLNk-gTFKEVDRKPFCHKCY 397 agent of lymphatic filariasis
XP_645632    129 CRHCDKPIisgk-----citVGTTRFHPEHFFCQFCKSNLSg-vGYKKQGDKCYCNECF 181 Dictyostelium discoideum AX4
NP_740934    270 CAYCSEEIdgailtalapnsERAQKFHTYHFMCTYCQKALNmhgTYREHDLKPYCHDCF 328 nematode
Q09476       353 CSQCRGAIngr------cvaAMGRKFHPEHFRCSYCNHQLTk-gTFKEVDRRPFCHKCY 404 nematode
Q2TCH4       450 CAGCEQPItgr------cvtAMGKKFHPQHLNCTFCLRQLNk-gTFREHDEKPYCQACY 501 African clawed frog
XP_001506418 319 CQGCGQPItgr------cisAMGHKFHPEHFVCAFCLTQLCk-gVFREQKDKAYCHPCF 370 platypus
XP_001367201 324 CPGCEQPIrgr------cvsAMGRRFHPEHFVCAFCLSQLNk-gVFREKNDKAYCQPCF 375 gray short-tailed opossum

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