2HVR


Conserved Protein Domain Family
RNA_lig_RNL2

?
TIGR02307: RNA_lig_RNL2 
Click on image for an interactive view with Cn3D
RNA ligase, Rnl2 family
Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins . [Mobile and extrachromosomal element functions, Prophage functions, Transcription, RNA processing]
Statistics
?
PSSM-Id: 274076
Aligned: 5 rows
Threshold Bit Score: 466.223
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2HVR_A            3 FKKYSSLEN-HYNSKFIEKLYSLGLTggEWVAREKIHGTNFSLIIERd----------KVTCAKRTGPILPAED----FF 67  Enterobacter...
tigr:KVP40.0133   3 FVKYTSLEN-SYRQAFVDKCDMLGVR--EWVALEKIHGANFSFIVEFkpneaqdgaefTVTPAKRTSTIGANVMgdydFY 79  Vibrio phage...
P32277            2 FKKYSSLEN-HYNSKFIEKLYSLGLTggEWVAREKIHGTNFSLIIERd----------KVTCAKRTGPILPAED----FF 66  Enterobacter...
AAR10824         76 FSAYTEIDLpTETRIDAIRRTGIASQ--EWVACEKVHGTNFSIYLINe---------sEVRFAKRSGIMDPSEN----FF 140 Leishmania m...
P82864           25 FERYTEIDNsNERRINALKGCGMFED--EWIATEKVHGANFGIYSIEge--------kMIRYAKRSGIMPPNEH----FF 90  Trypanosoma ...
2HVR_A           68 GYEIILKNYADSIKAVQDIMETSA-----VVSYQVFGEFAGPGIQKNVD-----------------------------YG 113 Enterobacter...
tigr:KVP40.0133  80 GCTSVVEAHTAKMEAISNWLWARGii-nvGETIIVYGELAGKGVQKEVN-----------------------------YG 129 Vibrio phage...
P32277           67 GYEIILKNYADSIKAVQDIMETSA-----VVSYQVFGEFAGPGIQKNVD-----------------------------YC 112 Enterobacter...
AAR10824        141 GYHLLIDDFTAQVRALCALLKRKYgvtgrMGRVVLHGELFGAKYKHPLVpkstkwctlpnkkripisgveiqsepfpqYS 220 Leishmania m...
P82864           91 GYHILIPELQRYVTSIREMLCEKQkk--kLHVVLINGELFGGKYDHPSVpktrktvmvagkp---rtisavqtdsfpqYS 165 Trypanosoma ...
2HVR_A          114 -DKDFYVFDIIVTTEs---gDVTYVDDYMMESFCNTFkFKMAPLLGRGKFEELIKLPndldsvvqDYNFTVDHAGLVDAn 189 Enterobacter...
tigr:KVP40.0133 130 -DKDFWAYDILLPET-----GKFLDWDVVLEACEFAK-VKTTHEIARGTLDELLRID--------PLFRSFHTPADVDG- 193 Vibrio phage...
P32277          113 -DKDFYVFDIIVTTEs---gDVTYVDDYMMESFCNTFkFKMAPLLGRGKFEELIKLPndldsvvqDYNFTVDHAGLVDAn 188 Enterobacter...
AAR10824        221 pELHYFAFDVKYSVSgaeedVVLLPFDDFTEVCSQVPnLLYAKPLVRGTLDECLAFD--------VENFITPLPALLGLg 292 Leishmania m...
P82864          166 pDLHFYAFDIKYKETeg-gdYTTLVYDEAIELFQRVPgLLYARAVIRGPMSKVAAFD--------VERFVTTIPPLVGMg 236 Trypanosoma ...
2HVR_A          190 kcvwnaeakgEvFTAEGYVLKPCYPS-WLRN--GNrVAIKCKNSKFSEKK------------------------KSD--K 240 Enterobacter...
tigr:KVP40.0133 194 ----------D-NVAEGFVVKQLRNEkRLHN--GSrAILKVKNDKFKEKKn-----------------------KAG--K 235 Vibrio phage...
P32277          189 kcvwnaeakgEvFTAEGYVLKPCYPS-WLRN--GNrVAIKCKNSKFSEKKk------------------------SD--K 239 Enterobacter...
AAR10824        293 ny------plEgNLAEGVVIRHVRRGdPAVEssGVsTIIKLRCSSFMELKhpgkqqelkatfldtvragalqrvRRGkkV 366 Leishmania m...
P82864          237 ny------plTgNWAEGLVVKHSRLGmAGFDpkGP-TVLKFKCTAFQEIStdraqgprvde---mrnvrrdsinRAGvqL 306 Trypanosoma ...
2HVR_A          241 PIKAKVELSEADNKLVGILACYVTLNRVNNVISKIGEIGPKDFGKVMG----LTVQDILEETSRE---GITLTQADNPSL 313 Enterobacter...
tigr:KVP40.0133 236 TPRAAVVLTEEQEKLHAAFSCYLTENRLRNVLSKLETVTQKQFGMISG----LFIKDAKDEFERDe-lNETAIARDDWDV 310 Vibrio phage...
P32277          240 PIKAKVELSEADNKLVGILACYVTLNRVNNVISKIGEIGPKDFGKVMG----LTVQDILEETSRE---GITLTQADNPSL 312 Enterobacter...
AAR10824        367 TVLADSMLPKLEAAANALLLNNVSEGRLSNVLSKIGREPLLTGDVKQEdvvlMLAQDALKDFLKEtdpVVLNTSLSFRKT 446 Leishmania m...
P82864          307 PDLESIVQDPIQLEASKLLLNHVCENRLKNVLSKIGTEPFEKEEMTPDqlatLLAKDALKDFLKDtepSIVNIPVLIRKD 386 Trypanosoma ...
2HVR_A          314 IKKELVKMVQDVLRPAWIELVS 335 Enterobacteria phage T4
tigr:KVP40.0133 311 IKRSLTNIANEILRKNWLDILD 332 Vibrio phage KVP40
P32277          313 IKKELVKMVQDVLRPAWIELVS 334 Enterobacteria phage T4
AAR10824        447 LIRSVYFAAEELLQGEWKRVMD 468 Leishmania major
P82864          387 LTRYVIFESRRLVCSQWKDILK 408 Trypanosoma brucei brucei
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap