Conserved Protein Domain Family
M3B_PepF

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cd09610: M3B_PepF 
Peptidase family M3B, oligopeptidase F (PepF)
Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.
Statistics
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PSSM-Id: 341073
Aligned: 75 rows
Threshold Bit Score: 535.195
Created: 7-Sep-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteactive site
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:H H EClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on related peptidase family M3B oligopeptidase F proteins with structure
  • Comment:generally in GluZincins, the zinc ion is tetrahedrally co-ordinated by three amino acid (two histidines and a downstream glutamate) ligands and a water molecule

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
ABK16232   51 PEEASAAIREYEALQEILqk---lDAYAALHFATRTRDPSTGALLQAIRefrsqvHRDTLFFELEWAQIDDEAFAAALrh 127 Syntrophobacter fu...
KUK77174   45 SKVLREALDEYEYLNSEHgiltkpYYFTLLSKELDLNNKELKARLNKLSnkatklGNELQFFGIKLSKISKKKQDEFVns 124 candidate division...
KKP55912   49 APALARAIKEYENLAGNPaae-rpYSYFAYRTVLNSEDNEAQAEIAKLAdfyaelSNEVEFFILEIGKISKDLQKKFLks 127 Parcubacteria bact...
KUK79836   58 EEQLLEALTEYEQLLNDLgga-kpLMYFHYLTAISSDDNQAHANLNKITtqltkaYNQLTFFPIKLGKIDPALQTKFLns 136 Microgenomates bac...
KKU70417   50 DDSLLKTLWEWDKLVGAGaw--kpVLYFAYKKSLNSKDNSAAANESRLVarltkaANQTIFFTNNISKLPEEKQTNLLne 127 Parcubacteria bact...
KKP92525   53 ALDEYEKLQTTTGICDKP------IYYFLLRNELDQTDSGIKARLNQIEeidtklINEIQFFGLNISKISKSKQKLFLey 126 candidate division...
KKQ99741   55 EASLLNALRDYEKISDIPvs--ktYMYLHLAQDLDSKNVKVRAKMNLVSqrlqkiGNSVLFFEVNLSKILPKYQKLFLcn 132 Parcubacteria bact...
KND47822   59 GLVLHKALTEYEKLIGQSgl--kaLMYFYYLRDTNASNPVVPARISLIEnrmakaQNKLVFFENSLGKIVPEKQKVFLed 136 Parcubacteria bact...
KQM11847   47 AVGLREMLERKDELALRHeg---vEEYCSLLFAADMTDPVANELNSAYTragteaSKAMAAVGIELGQLLMARPELIDdp 123 Methanomassiliicoc...
KQM12379   47 AAGLFKLLESRDEFSLKYeg---aAMYCNLLYSANSTDPVAQQLNDAMRratlraGQQLAFMDLELGKLLASRPEMVQap 123 Methanomassiliicoc...
Feature 1                                                                                     
ABK16232  128 salgpYRHYLELSRRYRPHLLTEpeeKILAEKEPVANDSWTTLFDKVLghlr------fgpGERTESe----vLSDLYAG 197 Syntrophobacter fu...
KUK77174  125 kelkeYKHYLEMLFANAKYILSDneeKVFSLTAKPSFSNWVNMIEELLskqilnvldeelnSKKISYne---aSKYLTSV 201 candidate division...
KKP55912  128 kelapFKYFLSKLFENAKHNLSEaeeKIMTLKGAPAHGMWVSGFSKLVskqt-----vkfeGKNIPIae---aSNKIPTL 199 Parcubacteria bact...
KUK79836  137 ktlarFHYFLSKRFELAKYDLTEaeeKILNLTDQTSYQMWVEGVTKAInkl-------tvkWQDRELpvseaaQKIFELP 209 Microgenomates bac...
KKU70417  128 rklkkFHYFLKYLFGRGKHTLSDeeeKILNLKYLPAHHLWVSGQERLLnskt-----vffaGQSLPLse---aMGKVSDL 199 Parcubacteria bact...
KKP92525  127 dglkpYKHYLEQAFLSTKYLLTDkeeKIFNLTSKTSHSNWVNMVSELLskqkmm--ildenIKKQEIsys-evNKYLDSQ 203 candidate division...
KKQ99741  133 kklskYNYLLRKTFETGKYVLTEpeeKILSLKSLPSRKLWTDAFSKIIskqt-----vrhnGKDIPIse---aSVIIRDL 204 Parcubacteria bact...
KND47822  137 pllahYKVFLHRIFENAVHDLSVaeeRIMNLKSLPAHNMWVSANESIMnmkt-----vtwkGKVMPLsq---aAQTIHPL 208 Parcubacteria bact...
KQM11847  124 a-laeYRHYLERRARAAPHLLSEaeeKVIMTKDQNGIQMMSRLQSKWLstrtf---eveiaGQRRSLgig-evYAYMHDP 198 Methanomassiliicoc...
KQM12379  124 e-lkeFRHMLERVLARVPHQLSEveeKLVMTKDQNGIDAWSQLQGDWLstrtf---ritidGEEKELpyg-qiIGLYEDP 198 Methanomassiliicoc...
Feature 1                                                                                     
ABK16232  198 Dr-TVRQQAARELtqgltemLPVLTHIFNTILLDKAVTDRLRryphWLRARNLANEaEDVMVEALVEAVSSRYDVVRRYY 276 Syntrophobacter fu...
KUK77174  202 Kk-EVRNKAAEEFnrinkeyIEIAEYEMNSILESKQVSDEYRgmerADLGRHLSTDmDSEVVDSLVGVVTENFDISKEYY 280 candidate division...
KKP55912  200 Dt-KKRRALHKEImiilekiSDFSESEINAIVTDKKINDKLRgfktPYEATVKGYEnDLKTVDDLAEVVTKNFGIAHKFF 278 Parcubacteria bact...
KUK79836  210 T--KDRRLLHQKVlrklstlSDFAESEINAIITNKTIEDELRgfkkPYHSRVMGSEnDPEIIELLVETVSKNFDLSHKFY 287 Microgenomates bac...
KKU70417  200 Qt-TPRRALGQNIvrmlkenSEFAENEINAVYTDKKINDELRgfkrPWHATVLDYQnDLAIVENLVEAVTKHFSISREFY 278 Parcubacteria bact...
KKP92525  204 Nk-KVRDYAAKEYnkinskyAEIAEFEINSILEDEKMSDEYRkiprPDFSRHIADDiESKVVDTLVQTVTENFDISRAYF 282 candidate division...
KKQ99741  205 KtqAERKKLHDAVmdkycelSEMAESELNAIVTDKKINDELRgydkAYDSTILGYEnDRKSVLNLVKTVTDNFNVAHRFY 284 Parcubacteria bact...
KND47822  209 TtqKERQKLAALVaevlkslAVFSEKEMNAVLTDKKINDELRgyttPYAQTVKSYNnDPAVIEQLVKVVTAKSSIAHRFF 288 Parcubacteria bact...
KQM11847  199 Dr-GTRRAVYESIgstlkrdELLWSDILRTIVADHAAMFKLRgydsPLEPTLLANDvSAGAVDALMEVVQGNVDLCQRYF 277 Methanomassiliicoc...
KQM12379  199 Rr-EVREEANRVVydalgqdEILWSTALRSVCADHVQMCEWRkypsVLTQSLLANDvDEAAVRALMSTMERNVGVYQRYL 277 Methanomassiliicoc...
Feature 1                                                                                     
ABK16232  277 RLkrtllgyeelFDYDRYAPipglpkkafsWEEAKHLVLSGFEAFSPeFAEIASDFFrHNWIHAPVLPGKrSGAFSHPtv 356 Syntrophobacter fu...
KUK77174  281 KKkaklleqetiGYHERNVPiskid-keyeFEEGLDIVKDVFYSIDKeFGDILTSFIdNGQVDAFPKANKsGGAYCIHin 359 candidate division...
KKP55912  279 KIkaemlkeknlSYADRGAKvgkie-ikipFKEAADKVIKSFNKADPaFGKFVEEMFtKGLVDVFPKKGKrGGAFCSSgp 357 Parcubacteria bact...
KUK79836  288 RLkarllnlpslVYADRNAQiqeik-kkypFDQAKNIVDETFQELDPrFSQIFQRMLkNGQIDIYPRKNKvSGGFCSSsi 366 Microgenomates bac...
KKU70417  279 KLkarllkekclTYHDRSAKigkvp-kkyaFAAASKILLKAFGKIHPdFAEIAIRLIsNSQVDVYPQKGKaGGAYCSGgv 357 Parcubacteria bact...
KKP92525  283 KRkakllglkklAYHERNVPlvgas-mkyeYSEAIALVKKTFGNLDPqFVEFVEAFAkNGHYDVYPSKGKtGGAFCISin 361 candidate division...
KKQ99741  285 AIkarmlklknlNYSDRAVPvgktk-rkvtFSESSDILQKLFSSIDPkFGEILKGYLaNRQIDAFPKVGKkGGAYCSYdh 363 Parcubacteria bact...
KND47822  289 KLkakllkqkklLYSDRGAHigtik-aqfsFEKSTELLKKIYNKIDPkYSDILDSFLeKGQIDVSPRVGKkSGAYCWSty 367 Parcubacteria bact...
KQM11847  278 GLkarllgldrlGSWDLRAPlpstpdrrysWQEARDLVLSTFRDFDReLGEWAGDMFeRGRIDAQVRRGKrTGAFCSTwv 357 Methanomassiliicoc...
KQM12379  278 VLkarlmglsklGNWDIIAPlpddpgrkysWSEARENVVEAYSRFDRqFGEYANDMYeKRHIDAEVRRGKvSGAFCATwf 357 Methanomassiliicoc...
Feature 1                           #   #                       #                             
ABK16232  357 psCHPYVLVNFtgtsRDVATLAHELGHGVHQVLArkqgl-lnadtPLTLAETASVFGEMIVF-RHLLERVesrkeRAALL 434 Syntrophobacter fu...
KUK77174  360 rnLPTYILLNYnskvNDVLTIAHESGHGIHSELVskqna-lnddySLALAEVASTFFEDFTL-EEIIKRTddkelIESLR 437 candidate division...
KKP55912  358 -sVPTFILLNHvddfRSLTTIAHEMGHGIHAKYSktqrt-lyeghTIATAEAASTFFENLVF-EEALKNIsp-kqKMILL 433 Parcubacteria bact...
KUK79836  367 -nNPTFVLLNHiddfNSVSTLSHEMGHAIHSELSkkqpv-lyqsySTSIAETASTFFEQFVF-EKLVSQFsa-kdKIVAL 442 Microgenomates bac...
KKU70417  358 -gTPTMLLLNWiggaNSVMTFGHEMGHAIHTEFSkkqip-lyqeySFTAAEIASTLFENFIF-DELTKNFsk-keKIIAL 433 Parcubacteria bact...
KKP92525  362 ksLPTYILLNHkdqlESVLTLAHESGHGIHAELSnekqnalncghPTSLAEVASTFFEDFVL-TEVLKDTkdekvIQAIL 440 candidate division...
KKQ99741  364 -kTPTFVLLNHtntfESLSTFAHEMGHAIHSEFSrtqpa-iyeshSTSTAEVASTLFESFLFyDQFEKFSke--eKIVAL 439 Parcubacteria bact...
KND47822  368 -lNPTFVLLNHtndfRSLTTYAHEMGHAFHSHFSraqgp-iyshySMSLAETASTLFETLAL-EAVYDSLsd-seKIILL 443 Parcubacteria bact...
KQM11847  358 agRSAFILQSYngrlNDVNTLAHEMGHAVHAYMYtraqnysnchvSLCVAECGSLMGELLLA-DRLKGSAssreeRQDIL 436 Methanomassiliicoc...
KQM12379  358 dgRSAYVLQSFnglvGDVYTQAHELGHAIHAYLGsraqrpsnyeiGSCIAECGSTFGELLLT-EHLLSNSsskeeKRAVL 436 Methanomassiliicoc...
Feature 1                                                                                     
ABK16232  435 CSKLEDSfaTVFRQVSMNRFESAVHNqrrsggeldpeRISQFWLDSQKQMFGDsvtltgdyriWWSYIPHFIHs--PGYV 512 Syntrophobacter fu...
KUK77174  438 FESMNDSvnTIFRQVAFYNFEKELHSkfrekgylsheEISDIFVKHMTAYLGDavdvddgmryGWIYVSHFRR---FFYV 514 candidate division...
KKP55912  434 HDKISDNiaTIFRQIACFNFENELHLrirkegflqkeQIAELMNKHMGAYLGPvfkldkidgySFVSWSHIRN---FFYV 510 Parcubacteria bact...
KUK79836  443 HNKLQDDinTIFRQIALFNFELELHQkiakhgfldsqGIGELLNYHMQSYLGPtvsldnldgnFYIFWSHIRN---FFYT 519 Microgenomates bac...
KKU70417  434 HDRLQDKisTIFRQIACFNFEKELHEkvksegfvpkeKMAELMNKHMKSYLGTivdltdddgyFFVSWTHLRR---FFYV 510 Parcubacteria bact...
KKP92525  441 DKKIHDDtaSIFRQVAFYNFEKELHHdfrekgfltkeYISDLFCKHMKSYMGDaviedesmrnGWIYVSHFRR---FFYV 517 candidate division...
KKQ99741  440 HDKIQDDvaTIFRQIACFNFELEMHEtirekgnmtkeELALCMNKHMKNYLGSkfklddkdgySFVGWPHIRY---FFYV 516 Parcubacteria bact...
KND47822  444 HDKINDDisTIFRQIACFTFEQDLHAgirtkgflskeEICEIHNKNMKTYLGPvftlhpddgyMFVQWSHIRN---FFYV 520 Parcubacteria bact...
KQM11847  437 VKILDGFtlSVFQEGFRFLFESSLYEqheegveldgkRISELWRTAQDRVYGDavqwlddsewDWARFPHHYFagtRFYN 516 Methanomassiliicoc...
KQM12379  437 CKVLDEFgmAAFQVSARYFFEHSMYDaikagrfldgeTIAGLWTAARDKIYGDavewlpemkwEWTMKLHYYIpnyRFYN 516 Methanomassiliicoc...
Feature 1                                                                      
ABK16232  513 YAYAFGELLVLSLYRQYrqtgasFVPLFRDLLEAGGkaSPNELLSPFGIDlsdpSFWKRGLEVIE 577 Syntrophobacter fumaroxidans
KUK77174  515 YTYASGLLISKYLQSEVren-reFVEKFKDFLKAGSskSPKDIFMDMGVDi---TDREFWEKGVK 575 candidate division WS6 bacterium ...
KKP55912  511 YSYAFGQLVSDALYERYkkd-htKIKDVIEFLSAGGsdSPENIFKKIGINpn-kKLFETGLLRIK 573 Parcubacteria bacterium GW2011_GW...
KUK79836  520 YTYAYGHLASKAMAAQVkkn-pqTIEKVIEFLSAGGsaKPKEILRKVGIDitqgDFFNQGLKAIS 583 Microgenomates bacterium 39_7
KKU70417  511 YSYAYGELASNALYQKYke--tgSPSAILKFLSAGGndSVENILAASGINvrnpDFFSDGLKQMR 573 Parcubacteria bacterium GW2011_GW...
KKP92525  518 YSYASGLLISKALQKMVkdd-kkNIVLVKRFLESGStqSPKELFKGIGIDitkkEFWLNGIEEIK 581 candidate division WS6 bacterium ...
KKQ99741  517 YSYAFGQLASKALYKKYqed-ktYIEKIKKFLSLGGsmSPEDIFKSIGVDvlkpDFFKKGIESIE 580 Parcubacteria bacterium GW2011_GW...
KND47822  521 YSYAYGMLVTKAFLRRYkqd-psSWSSIEKFLAAGGkdSPENILKEIGIDvseaGFWEEGLKEIE 584 Parcubacteria bacterium C7867-002
KQM11847  517 YPYTFAQLFVFSLYRMYkeqgaeFVPAFKELLSAGSsrSAAELAAGLGMDiespSFWSKGMEQAR 581 Methanomassiliicoccales archaeon ...
KQM12379  517 YPYVFAQLFVFAMYRLYleqgeaFVPKIKALLSAGSsrSPGELAKELGFDisseEFWQKGIQQAE 581 Methanomassiliicoccales archaeon ...

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