2CPI,2PE8,1JMT


Conserved Protein Domain Family
RRM_1

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smart00361: RRM_1 
Click on image for an interactive view with Cn3D
RNA recognition motif
Statistics
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PSSM-Id: 214637
Aligned: 13 rows
Threshold Bit Score: 40.0818
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CPI_A     29 DPEVLKR-----PEYFGKFGKIHKVVINNST----------S----YAGS--QGpsaS--A--YVTYIRSEDALRAIQCV 83  house mouse
EAW98902   91 EEETYQQfldfyEDVLPEFKNVGKVIQFKVS----------Cn--lEPHL--RG---N--V--YVQYQSEEECQAALSLF 149 human
XP_535599 139 YDEFFEEvftemEEKYGEVEEMN--VCDNLG----------------DHL--VG---N--V--YVKFRREEDAEKAVIDL 191 dog
AAA73382  293 DDE-LEDevggeCAKYGTVTRVLIFEITEPN----------F----PVHE--AV---R--I--FVQFSRPEETTKALVDL 348 thale cress
EGA83123  150 YEEVAPTlk--seKYFGQYGKINKIVVNRKTphsnnttsehY----HHHS--PG---Yg-V--YITFGSKDDAARCIAQV 215 Saccharomyces cere...
XP_416473 319 VDEDLEVetkeeCEKYGKVGKC--VIFEIPG----------A----PDDE--AV---R--I--FLEFERVESAIKAVVDL 373 chicken
NP_012849 436 KDETFITeiketLKYSIAGADTIKICQPGVD----------YrlnfENLAsgAG---N--I--YIKFKTLEAAKHAMEEL 498 Saccharomyces cere...
NP_011738 210 rSHDILNy-----fWFYNIRSSFKIYWDD------------------EMK--RN---L--R--FISFENSHDAYRFKRNY 257 Saccharomyces cere...
O13364    210 qSSNILNy-----fWFYNIRSSFKMYWDD------------------EMK--RN---L--R--FISFENSNDAYRFKRNY 257 Saccharomyces bayanus
NP_594528  53 KQQDFFRflsskVLAKIGKVKENGFYMPFEE----------K-----NGK--KM---SlgL--VFADFENVDGADLCVQE 110 Schizosaccharomyce...
NP_593078 129 NEENINVlk--gPEYFGQYGKIIKIAINKKA----------A----ANSA--NG---H--VgvYITYQRKEDAARAIAAI 185 Schizosaccharomyce...
2PE8_A     22 VDEDLEVetkeeCEKYGKVGKC--VIFEIPG----------A----PDDE--AV---R--I--FLEFERVESAIKAVVDL 76  human
1JMT_A     36 YDEFFEEvftemEEKYGEVEEMN--VCDNLG----------------DHL--VG---N--V--YVKFRREEDAEKAVIDL 88  human
2CPI_A     84 NNVVVDGRTLKAS 96  house mouse
EAW98902  150 NGRWYAGRQLQCE 162 human
XP_535599 192 NNRWFNGQPIHAE 204 dog
AAA73382  349 DGRYFGGRTVRAT 361 thale cress
EGA83123  216 DGTYMDGRLIKAA 228 Saccharomyces cerevisiae Lalvin QA23
XP_416473 374 NGRYFGGRVVKAC 386 chicken
NP_012849 499 PGTQFNDRTVLCT 511 Saccharomyces cerevisiae S288c
NP_011738 258 HGLLAKELLTLSE 270 Saccharomyces cerevisiae S288c
O13364    258 HGLLAKELLNPPR 270 Saccharomyces bayanus
NP_594528 111 LDGKQILKNHTFV 123 Schizosaccharomyces pombe 972h-
NP_593078 186 DGSVSDGRHLRAS 198 Schizosaccharomyces pombe 972h-
2PE8_A     77 NGRYFGGRVVKAC 89  human
1JMT_A     89 NNRWFNGQPIHAE 101 human
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