Conserved Protein Domain Family
HVD

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cd08193: HVD 
5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor
5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Statistics
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PSSM-Id: 341472
Aligned: 52 rows
Threshold Bit Score: 511.673
Created: 3-Aug-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activemetal binding
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       #                                             
BAC22648    6 FETTPRIICHNGas-tKLGEAArnlGIRHAFFVTDKgvhqaGLTSAAMDSLkaadiaVTIFSEVQADPPeSVIVQAAAAA 84  Comamonas sp. NCIM...
AAZ18706    6 FYTNGHIVSEADsmrqKLGDLAkqyYATSAIIITDAgiselGYVDIARKSLekaganVVVFDSVVADPPiEVVEEAIELA 85  Psychrobacter arct...
KRP72570    5 FRSVPRIVCEAGal-hSVGTELkglGAQRVMLVCDPgivslGFAGKAQAALeaagcaVTVFDQVVPDPSsAVVKEAAEQA 83  Pseudomonas veronii
EAP78753    5 FLSTPRIVCESGgl-gRIGSLMqdlSCTRALVVTDPgilacGFADEAAASLraagieVEIFHKVEADPPiAVVEAAVEVA 83  Sulfitobacter sp. ...
SEF86362    6 FRAPPRIVSEIGai-dRLGEFAqelGMRRPLIVCDPgiaacGIAARAIEALrragldAQLFDAVEADPPaAMVRRAVEAA 84  Thauera chlorobenz...
EPJ92622    5 FRSVPRIICEAGal-qEVGSVFrglGAQRVILVCDPgivslGFAGQAQAVLetagceVAVFDQVAPDPSsTLVEQAVKQA 83  Pseudomonas sp. CF149
OAH52351    5 FRSVPRIVCEAGal-hSVGTVLkglGAQRVMLVCDPgivslGFAGKAQAALeaagcaVTVFDQVVPDPSsAVVKEAAEQA 83  Pseudomonas monteilii
EKF08824    5 FRSVPRVVCEAGgi-aKTGILMkelGASRVTIVCDPgivklGFAQKAQDALeaagiaVQVFSDVEADPPqKIVEAAITGA 83  Thalassospira prof...
OAZ09726    5 FRSVPRIVCEAGgi-aKTGSLMqelGASRVIIVCDPgivklGFAQKAQDALeaagiaVQVFSDVEADPPqKIVEAAITGA 83  Thalassospira tepi...
SIS67172    5 FRSTPRILCQAGgl-sKLGEILhrlNARRVMIICDPgivalGFAEQACQSLasagitAAVFSDVAADPPvAMVHAAADAA 83  Insolitispirillum ...
Feature 1                 ###  #  #                                ## #                 ##    
BAC22648   85 REagaNGIIGFGGGSSMDTAKLVALLVKSPqeLSAIYGAGlARGPRLPLIQIPTTAGTGSEVTPISVVTTPTdEKKPVVS 164 Comamonas sp. NCIM...
AAZ18706   86 RAnqcDLVIGLGGGSSIDTAKIVALYPNEFesVNELLEADiSGFKKMPLFAIPTTAGTGAEATFVSVITAKDgSKKAIYT 165 Psychrobacter arct...
KRP72570   84 RQfkaDGVLGLGGGSSLDAAKLVALLINSEqpLEDLYGTDkAQGQRVPLVLVPTTAGTGSEVTWVSVITDEQqRKQAVYS 163 Pseudomonas veronii
EAP78753   84 RAfgaDGIIGLGGGSSLDTAKVIAAAVANDqpITDMIGINqVTDKRLPLIQVPTTAGTGSEVTWVSVLTSEShEKKAVYA 163 Sulfitobacter sp. ...
SEF86362   85 GQgraDGIVGLGGGSSLDTAKVVALLARSGqdIDEIYGVDrARGGRLPLIQVPTTAGTGSEVTWVSVITCESlEKKAVYA 164 Thauera chlorobenz...
EPJ92622   84 QGfkaDGVLGLGGGSSLDAAKLVALLINSEqsLEDLYGTDkAQGQRTPLVLMPTTSGTGSEVTWVSVITDAQqRKQAVYS 163 Pseudomonas sp. CF149
OAH52351   84 RQfkaDGVLGLGGGSSLDAAKLVALLINSEqsLEDLYGTDkAQGQRLPLVLVPTTAGTGSEVTWVSVITDEQqRKQAVYS 163 Pseudomonas monteilii
EKF08824   84 RDwkaDGVIGLGGGSSLDSAKLVALLANSDqtIEEIYGVDkATGDRLPLIQIPTTAGTGSEVTWVSVITDNDhLKQVVYT 163 Thalassospira prof...
OAZ09726   84 RDwkaDGVIGLGGGSSLDSAKLVALLANSDqtIEEIYGVDkATGDRLPLIQIPTTAGTGSEVTWVSVITDNDhLKQVVYT 163 Thalassospira tepi...
SIS67172   84 RAvqaDGVVGLGGGSSLDTAKLVALMLNSDqpLEQMYGTNlATGQRVPLVQVPTTAGTGSEVTWVSVVTDDQgRKKAIYA 163 Insolitispirillum ...
Feature 1                  #       #      #   #                                               
BAC22648  165 SlLLPDIALLDAQLTIALPPAVTGATGVDALVHAIEALSTRlKRNPLSDLLAIKAVQMIYDHLPLAVKEGSNLEVREQML 244 Comamonas sp. NCIM...
AAZ18706  166 PkILPDVAILDATLTLKLPRHITAATALDAMVHCIEAYTSRtKKNPISDALAVKGLQMLWSNFDKVLNHGDDIDARTEML 245 Psychrobacter arct...
KRP72570  164 PqLMPDVAVLDPLLTLGLPAKVTAATGLDAMVHAIEAYTSRtRKNPIADGLATAALGLLGANLRKVLANGQDVAARTAML 243 Pseudomonas veronii
EAP78753  164 PqLLPDVALLDAKLTLGMPRHITAATALDAMVHAIEAVTSRtRKNPISDGMADKALVLLGQNLPIVMETPSDLSAREAML 243 Sulfitobacter sp. ...
SEF86362  165 PqLLPDLALLDAGLSAGMPPRVTAATALDAMVHAIEAYTSRtKKNPVADALARKALALLAGKLPRVLEDGGDLEARAAVL 244 Thauera chlorobenz...
EPJ92622  164 PqLLPDVAILDPQLTLGLPAKVTAATGLDAMVHAIEAYTSRtRKNPISDGLATSALALLGANLPKVLANGRDLEARTAML 243 Pseudomonas sp. CF149
OAH52351  164 PqLMPDVAVLDPQLTLGLPTKVTAATGLDAMVHAIEAYTSRtRKNPIADGLATAALGLLGANLRKVLANGQDVAARTAML 243 Pseudomonas monteilii
EKF08824  164 PqLMPDIALLDAELTYGLPQKVTAATGLDAMVHAIEGYTSRtRKNPIADGMAVTALLLLGKNLMKVIENPGDKEARSAML 243 Thalassospira prof...
OAZ09726  164 PqLMPDIALLDAELTYGLPQKVTAATGLDAMVHAIEGYTSRtRKNPIADGMAVTALSLLGKNLMKVIENPGDKEARSAML 243 Thalassospira tepi...
SIS67172  164 PqLLPDVALLDPLLTTGLPPKITAATGLDAMVHAIEAYTSRtGKNPIADGLAAKALALMGQNLRTAMTDGSNLPARTAML 243 Insolitispirillum ...
Feature 1                       #   #         #                                               
BAC22648  245 LASLFAGMAFSNASVGAVHAFAYPLGVRFHVPHGLSNSLMLPHILRFNQQAAeSTYALLGRSIrpel-esaSDAAASAAF 323 Comamonas sp. NCIM...
AAZ18706  246 LGSTLAGIAFVNASVAAVHGLSYPLSINFHVPHGHANALVMCGVFNFNLPVAaPLYAELARAVmpietsgmNDLEAANQF 325 Psychrobacter arct...
KRP72570  244 QGSLMAGMAFVNASVAAIHGLAYPLGARFHIPHGHANALVMAPVLRFNLSAAqSQYAELAAYLlpdr-hfeHEADAAQAF 322 Pseudomonas veronii
EAP78753  244 LGATLAGMAFINASVGAIHALSYPLGTGFKVPHGHANALVAGPVMRFNMPVAeAEYARLSRLLlpsr-pfnSDAAAAHGL 322 Sulfitobacter sp. ...
SEF86362  245 EGAMLAGMAFVNASVAAIHGLAYPLGARFHVPHGHANALVMGPVLRFNLRAAtPLYAELAPCVlpgr-afaSDAEAAAAF 323 Thauera chlorobenz...
EPJ92622  244 QGSLMAGMAFVNASVAAIHALAYPLGARFHIPHGHANALVMAPVIRFNLASAqRHYAELAAHLlpgq-hfdNEASAAEAF 322 Pseudomonas sp. CF149
OAH52351  244 QGSLMAGMAFVNASVAAIHGLAYPLGARFHIPHGHANALVMAPVLRFNLSAAqSQYAELAAYLlpdr-hfeHEADAAQAF 322 Pseudomonas monteilii
EKF08824  244 QGSLIAGMAFANASVAAIHGLAYPLGARFHIPHGHANALVMAQVIRFNLPAAkKLYAELAPCLiegv-dfdSEDAAAEAF 322 Thalassospira prof...
OAZ09726  244 QGSLIAGMAFANASVAAIHGLAYPLGARFHIPHGHANALVMAQVIRFNLPAAkKLYAELAPCLiegg-dfdSEDTAAEAF 322 Thalassospira tepi...
SIS67172  244 QGSLMAGMAFVNASVAAIHALAYPLGARYHVPHGHSNAIVMAPIMRFNLPVAaPLYAELARVMlpgq-rfgSTAAAAEAL 322 Insolitispirillum ...
Feature 1                                                                     
BAC22648  324 VDAMSELVAQMPYAQSLRELGVe--rDDLAMLAKDVMGIQRLLDHNPCPITh-EDAMKLYARAF 384 Comamonas sp. NCIMB 9872
AAZ18706  326 INQLRDFLKTSGLKYRLNELDIte-qDIPALADIVINTYARLIETNPMNMSl-EEVKMIYKEIL 387 Psychrobacter arcticus 273-4
KRP72570  323 VQAIETLVAASGLETRLSKLEVdepaLAEMANAVVLNLRRLIDSNPKDMTE--QDVEALYRSIF 384 Pseudomonas veronii
EAP78753  323 IDEMERMLVESGLESRLSGVGVte-aAIPGMANEVVTGITRLLETNPRDMTa-EDVSRLYQEAL 384 Sulfitobacter sp. NAS-14.1
SEF86362  324 VAAMEAMAGWGGLATRMSHFGVt--aADIPSMADEVVTQIQRLIATNPCDMgfEDVCAIYRAVL 385 Thauera chlorobenzoica
EPJ92622  323 VQAVEGLVKDSGLEQRLSNLNVdq-aSLPVMASEVVVGIRRLIDSNPCDMTe-QDVEAIYRSIY 384 Pseudomonas sp. CF149
OAH52351  323 VQAIEALVADSGLETRLSKLEVd--ePALAEMANAVVVNLRRLIDSNPKDMteQDVEALYRSIF 384 Pseudomonas monteilii
EKF08824  323 VKRIEEMVPASGLEIRLRDLGVte-eSLPEMAEEVFTKIHRLIDSNPRDMTa-KEIEAIYRSVY 384 Thalassospira profundimaris WP0211
OAZ09726  323 VKRIEEMVPASGLEIRLRDLGVt--eESLPEMAEEVFTKIHRLIDSNPRDMtaKEIEAIYRSVY 384 Thalassospira tepidiphila MCCC 1A0...
SIS67172  323 VVAIEELVADSGLERRMSALGVpadaIPSMAEEVDVGIRRLIACNPRDMTR--ADIVAVYEGVF 384 Insolitispirillum peregrinum

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