Conserved Protein Domain Family
PBP2_polyamine_1

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cd13588: PBP2_polyamine_1 
The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold.
This group represents the periplasmic binding domain that functions as the primary high-affinity receptor of an uncharactertized ABC-type polyamine transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270306
Aligned: 27 rows
Threshold Bit Score: 291.893
Created: 28-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the polyamine transporter family.
  • Citation:PMID 9651355

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                         
YP_002484303  54 AVAIVAWPGYlergetdpsYDWITNFEKQts---cKVTVKTAATSdeMVSLMNqg-----gFDLVTAsg-dATRRLIAGK 124 Cyanothece sp. ...
NP_103470     53 EVRFDGWGGTvq------dAIDKYAFKPYtaktkiKVVQGTFGDEdeIITKIKtak--pgdYQVIHSsgvnYYIKYVNGG 124 Mesorhizobium l...
EET49473      25 ELLIFDWSGYe-------eADFYTKYTEEng---vAPTFAFFGEEeeAFQKLRsg----frADVSHPcs-qSVDKWRQAG 89  Thalassiobium s...
YP_002604729  55 SITFHGWGGTva------eAFVKYAFTPYtkatgvTVVNAAFTGMdaFLTQVKasippggeFNLAHLsavyDYARYTELG 128 Desulfobacteriu...
YP_002540060  42 KITFYGYGGQsk------kNMHEVVFTPFtqatgiEVVEGTFGDEteIITRLKsgg--agdLSVYSNagfdMYKRYVDLG 113 Agrobacterium v...
NP_104731     32 DLIVFDWSGYe-------dPSFHPKYVEKng---dSPTFAFFGDEdeAFEKVRsg----fkADLGHPcs-qSVTKWREAG 96  Mesorhizobium l...
ADK80408      32 VLVVVNWKDYgs-----dsEKVIRHFEESyg---cKIVHEYMASEeeLLTKLRtgg--igkFDVVLPna-sVLPMAINEG 100 Spirochaeta sma...
ADH89342      40 PIVLLTWETYh-------dPAWCKEWGEAng---vEVKPVVIGSVdeLFSQPFsga---vqPDVMYIet-gSLPRFKEAG 105 Starkeya novell...
NP_107559     28 NLRVLAWDGYa-------dPDWVKDFTAAtg---iGVDVVFIGSDdeIWAKIKgse--gqdFDVFAVnt-aQLQRYIKAD 94  Mesorhizobium l...
NP_107714     34 KLQYFTWSGYe-------lPDFNKSFLAAhp---dGVEASIFGDDddAFTKVKag----frPDIAHPcy-dKVARWNKEG 98  Mesorhizobium l...
Feature 1                                                                                        
YP_002484303 125 tvqeINIDLIPswatidprl---qnapwhtvnGKHYGVPYqWGSNVLMYNtatfpqppqswnvvfeeqslpdgqsnrGRV 201 Cyanothece sp. ...
NP_103470    125 ltseINEANIPnmanvlqpm----idpfrkltPKLSAVPYdYGTTGIAYNtkvispeeakek----gaallldkkyaGKV 196 Mesorhizobium l...
EET49473      90 liepWDLSKIPsystvadey---qtapiftdgDDVYFIPAdLGATAIAYNteevpaedvas------lqvfhnekyaGRL 160 Thalassiobium s...
YP_002604729 129 fgvaLDEAKIPnlanvmpkm---vntlkdisnGTLSAVPYdIGQTGIAYNtekiskadaekl----gtkllwdknlkGKI 201 Desulfobacteriu...
YP_002540060 114 anseLNEDNIPnlklvsqvli--eqmrkltpnGKLSAIPYlYGTTGIAYNtkhvsreeakkl----gykllwdkrfsGKI 187 Agrobacterium v...
NP_104731     97 llqpLDTSKITgwkdlnpgim-amknlattddGKAWFMPWdWGNTQLTYNsskidakdves------lkafadpkfkGRV 169 Mesorhizobium l...
ADK80408     101 lieaIDTSKLDnygdvfakf---rqlpensknGKLYAVPWvWGSTAIAYNsdmiqekvdt-------isvlwdqnyaGKI 170 Spirochaeta sma...
ADH89342     106 livpFDTSKVPnvanitpkl---dwkkytnvgGEIVAAPYnWGTQPLMYNadlikspdsw--------aalwdekyrGKV 174 Starkeya novell...
NP_107559     95 lvspIDITKLSnqkevlprfrdlsqvsgdtkdGKVYGIPFcFDSIGLIYDtdkvkpapts-------msvlwdpaykGKV 167 Mesorhizobium l...
NP_107714     99 llqpIDTKRIKnwdsifpvfk--nlpdlqagdGKVWMVPWdWGNTSILYRtdlvknpeas-------wnllwdkqyaGRM 169 Mesorhizobium l...
Feature 1            #                                                                         # 
YP_002484303 202 QAYDGPi--YIADAALYLKthqpelgitdpyeltrEQFTAAIALLKQQRKLVGRYWhdanvQVDDFLNeg--vvASSAWp 277 Cyanothece sp. ...
NP_103470    197 GGYSDMt-tRVWYAALATGqdp----------nnlKDMDAIWAKVRETRDLAKKFWssgaeLMDLLSKge--ivVTDAWs 263 Mesorhizobium l...
EET49473     161 SLPDNVe-dAFALAYLATGisdwt-------qattDDVAAAADWLRTAHALNRAYWadgaeLQQLMATge--vlVSWTWn 230 Thalassiobium s...
YP_002604729 202 SSWGADfrtNMWYAALYTGqdp----------nniTDVNAVWDALREQRKLIKKYWesgaeLMSLLANgd--ihATTAYs 269 Desulfobacteriu...
YP_002540060 188 ALSNYAl-dRIWSAALYTGqdp----------nklSDTNAIFAALREQRPLVKKYWesgseVMDLLAKee--vvVAETWs 254 Agrobacterium v...
NP_104731    170 SIGDNVd-dAYALASLAIGlrdwt-------kmtdDQFKQASDFLRQVHKNVRSYWtdttdIVQLLSGge--vdLAWAWn 239 Mesorhizobium l...
ADK80408     171 AFRDDYn-dAVMTAAIILGqdp----------nhpSDLEAIKAKLIAQKPLNRTYWktgdeFSKLFANkq--iaVGMMWs 237 Spirochaeta sma...
ADH89342     175 NIFDDCt-iVFPMIALYVGakdpf-------nltdADFEACEKALRELRPQIRTIArgfddAVTIYAAgd--avIGYCQn 244 Starkeya novell...
NP_107559    168 LAYDNGe-hNFSFTALTLGykdpf-------nldaEQMAAVKAKLVELKRNVLSFYttadeAQQIYQNndvaliWANYGq 239 Mesorhizobium l...
NP_107714    170 ATIDAVh-dTPIVAALLAGvnpf--------dmtpEQMDKVAAKLREQRPLLSSYTtdmtsVEQALASgq--lvAAMTWn 238 Mesorhizobium l...
Feature 1                                  # #                                              
YP_002484303 278 -FQVNLLKsqn-apVESVIPAEGaTGWADTTMMHAka-pHPNCAYQWLEHSLsPKVQGDVAAWFgSVPVvpAACE 349 Cyanothece sp. PCC 7425
NP_103470    264 -GRVAALQdqg-hpIGYLDPAGS-YAWMEDMLILKg--sPMAECEELINFMLdPATAIAVAEGQsYPPSldPTKV 333 Mesorhizobium loti M...
EET49473     231 -EVPVTMVgedfpiGFNRSPAEGsSVWFCGYVNLVdgpgSEDKAHQFMEAWLqPTTTDYIVNEWgYGHSntQAMA 304 Thalassiobium sp. R2A62
YP_002604729 270 -GRVATLQkqg-hpIAYMAVPNT-YSWMEYIYVLKg--tDLNVAQDLLNFMLdPECSIAVAEAQgYPSSldPTKV 339 Desulfobacterium aut...
YP_002540060 255 -TRAAALKkdn-ypIEYLEPEQC-QAWVQNLFVLKg--aPMEPCEKLLDLMLkPEINFEYCMRTnNGSAldPRKT 324 Agrobacterium vitis S4
NP_104731    240 -DATVQSVkagvpiKSVKDTNEGiSTWVCGYVLFKdapgNIDKAYDYLNAINdPETAKVLVKDWgYGQAnaKGMA 313 Mesorhizobium loti M...
ADK80408     238 -GQAAAMKlng-epIEYVIPKEGaIGWVDNWAIVKda-pHKDMAYAFINYMIgEAFQKAWVTSGgPAPVnqRVAE 309 Spirochaeta smaragdi...
ADH89342     245 iAVVTSLQdkg-knFNYSLPKEGtPTWIDCTGVSKk--gDRDIVYKFINDNLsVKWQARFIESStNNGVlnLAEA 316 Starkeya novella DSM...
NP_107559    240 -QQVKALQkig-ahVAYVNPSEGaLAWLDNWVISKgv-rDNAAAEKWIDFMLtKKVSGELSERTgFGNTvvESSS 311 Mesorhizobium loti M...
NP_107714    239 -ASATSLKkqg-vpVEFMKPKEGmLTWACGFVMLKda-kNVDLAYDFINSRLdADSGKFLIQSYgYGSSlsTAFA 310 Mesorhizobium loti M...

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