3MKU


Conserved Protein Domain Family
MATE_NorM_like

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cd13131: MATE_NorM_like 
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Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM
The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.
Statistics
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PSSM-Id: 240536
Aligned: 66 rows
Threshold Bit Score: 286.318
Created: 23-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
cation binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:cation binding site [ion binding site]
Evidence:
  • Comment:MATE transporters may transport a monovalent cation into the cell in exchange for shuttling a positively charged substrate in the opposite direction.
  • Structure:3MKU: NorM from Vibrio cholerae binds a Rubidium ion. In this conformation, the transporter is open towards the extracellular space.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3MKU_A        10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAiDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRqHKIPF 89  Vibrio cholerae...
Q8DPQ6        10 KLVLFLKIFFPILIYQFANYSASFVDTAMTGQYNTmDLAGVSMATSIWNPFFTFLTGIVSALVPIIGHHLGRGKkEEVAS 89  Streptococcus p...
NP_465371     10 KWKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSNqALAGVAIGSSFWAPVNAAFSGLLMAITPIIAQLIGAKKeKQVKN 89  Listeria monocy...
YP_001698443  18 KYALLLKMIIPILVTQVAIYLVSFFDVLMSSRYGTsDLAGVSIGSSIWMPIYTGLSGILLAITPIVSQLVGAKKeMDAKK 97  Lysinibacillus ...
YP_002315741  10 KIKQFLHILFPVFLTQISLYMMNFFDVTMTGKYSSvDLAGVAIGSNIWIAIFTGIGGVLTGLTPIVSQAFGAKDhERISR 89  Anoxybacillus f...
YP_002886620  10 KIKLFFTIFFPILVTQVSFYLISFFDTVMSGRAGAvDLAGVGVGSSLWMPVYTGLSGILLAVAPIVSQALGARDrQQIQR 89  Exiguobacterium...
YP_001812974  10 KIQQFMKIFFPILVTQVAFYLISFFDTVMAGRYGSaDLAGVGVGASLWAPVYTGLTGILLAVAPLVSQAMGARKeREVKR 89  Exiguobacterium...
YP_147442     10 KWRRLFALFLPIFVSQTGQYAMNFVDVAMSGHASAeDLAGVAIGSSLWVPVFTGAGGILLALSPIVSHHFGAGRhDSITR 89  Geobacillus kau...
EEX68645      13 KARRFFSVLLPIFVTQVALTATGFFDTVMSGHVSEqDLAGVAVGSNLFMPFFGSFLGIISVLTPTIAQLHGAGRqERIGF 92  Mitsuokella mul...
EEW96549       8 DMKKLLSVTFPILVAQLSTMGINFINTTMAGHAGAdDLAGVSVGTGIFFPFEGAAIGLLMAGTPIIAQLIGKNEkSSIPF 87  Dialister invis...
Feature 1                                                                                        
3MKU_A        90 EVHQGLILALLVSVPIIAV-LFQTQFIIrfMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFI 168 Vibrio cholerae...
Q8DPQ6        90 DFYQFIYLALGLSVVLLGMvLFLAPTILnhIGLEAAVAAVAVRYLWFLSIGIIPLLLFSVIRSLLDSLGLTKLSMYLMLL 169 Streptococcus p...
NP_465371     90 TVHNGLYIALFLAFILILInFLVVPMILthMPVTAEVADIARHFLNGICIGIPAFFISAILRSFIDSLGLTRVTMLITLC 169 Listeria monocy...
YP_001698443  98 AVQQGIYVAITLSIIIFIGlFFGIDWILskMSLETSVHTIAKGYIYAMCAGLLPLFLFFVMRCFIDALGQTRVTMIITLM 177 Lysinibacillus ...
YP_002315741  90 TVEQAIYLAIIFACFVLTIiYFLVPILLenMYIESNVQIVAYQYLQALCIGIVPIFIYYVLRSFMDALGQTKVTMTLTLC 169 Anoxybacillus f...
YP_002886620  90 TLFQGIYLAIMLSVITLTLgSFLVPMAIesMGLSVEGKRIATQYLLALGFGVLPMFLFNVLRTLMDALGKTRVSMILILL 169 Exiguobacterium...
YP_001812974  90 IVIQALYVSVVIIVLTVLLgLVLVNPILnqMELSDQARHVARIYLVMLGFGIIPMFVFFVLRTLIDSLGKSNITMTLLLF 169 Exiguobacterium...
YP_147442     90 AVAQALYLAVALAVAIVLIgAAAVPFILkqMSLDENVRHIAFHYLRALSFGIIPLFLYSVLRYFIDALGQTKVTMWITLT 169 Geobacillus kau...
EEX68645      93 VVRQGFYWSLGLAGAFLLLgILFVPTILefLALEPKVERVAAGYLAAIAFGIVPIFLAGVLRNLIDAHGYTRLTMVITLV 172 Mitsuokella mul...
EEW96549      88 VVRTGIYIALALSMLLFAGyFFFADEVVssMGLTAEVEYIAKNYIFAMVVAMVFISLIIPLRSLTDVAGSTATSMKLFLS 167 Dialister invis...
Feature 1                                                                                        
3MKU_A       169 GLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAhvkvfetfhKPQPKELIRLFRLGFPVA 248 Vibrio cholerae...
Q8DPQ6       170 LLPLNSGFNYLLIYGAFGVPELGGAGAGLGTSLAYWVLLGISVLVLFKQEKLKalhl-ekriLLNMDKIKEGVRLGLPIG 248 Streptococcus p...
NP_465371    170 TVPFNIFLNYCFIFGNFGFPEMGGAGSGYATGITYWLVVLVSVILIQTQTRLRkfgvfkgltALRFSKIKEIIGIGVPNG 249 Listeria monocy...
YP_001698443 178 TTPINIVLNYIFIFGKFGLPELGGIGAGVATAITYWLIFFITAWIIAKRVPFErfrmfhdwrKPAWLQWKEILLIGVPIG 257 Lysinibacillus ...
YP_002315741 170 SLPLNVLLNDIFIFGRWGVPAFGGVGAGYATSITYCCLLLCAFLLIRFRKPFStynilkklhPISLSIWKQLILIGIPIG 249 Anoxybacillus f...
YP_002886620 170 GLPINVGLNYIFIFGKLGVPAYGGVGAGIASSITYWLLFFMAFFFVRNGKPFReykflrtteRMVWLRQKELLQLGTPIG 249 Exiguobacterium...
YP_001812974 170 SLPINVAFNYLFIFGKFGFPELGGIGAGVATAITYWILCIAVIGVVLKGELFQrlgilrrfyKPDVTRIKELVLLGAPIG 249 Exiguobacterium...
YP_147442    170 ALPVNMLFNWLLIYGHGGFPRLGGIGTGYATAITYAYCFAAAAFAALKFRRLApyrvlvrfyRPSWAAWKELLKTGVPIG 249 Geobacillus kau...
EEX68645     173 TVPINVIANYIFMYGTLGIPAFGGIGAGIGSAIAFSLNLLFNAIVVVTVEPFRsyhifrslpRPDLAEWKRSLSLGIPIG 252 Mitsuokella mul...
EEW96549     168 ALPINAVLNYFLIYGHGGLPRLGGIGAGVSAAITYFFVLLMFLYVIHSDERFMgkei-fasgKSRFCDWKEYMSVGIPSG 246 Dialister invis...
Feature 1             #   #                         #  #                                         
3MKU_A       249 AALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGaAVSIRVGHKLGEQDtKGAAIAANVGLMTGLATA 328 Vibrio cholerae...
Q8DPQ6       249 GTVFAEVAVFSVVGLIMAKFSSLIIASHQSAMNFSSLMYAFPMSISsAMAIVVSYEVGAKRfDDAKTYIGLGRWTALIFA 328 Streptococcus p...
NP_465371    250 LTILFETSIFSAVTILMGAFGTETIAAHQSANSVCTLLYAFPLSVAsTLTILGGYETGAKRlKDAKQYRHIGMAAAILIG 329 Listeria monocy...
YP_001698443 258 ISLFAETSIFSAVTMMMSNFSTTIIAAHQIAINFTSLLYMVPLSISmGVTILVGFEIGAGRmRDARTYSYLCVGTAIIFS 337 Lysinibacillus ...
YP_002315741 250 LAIFFETSIFSAVTLLMSQFGTTAIAAHQAALNFGSLLYMIPLSVSlTLTIIVGFEVGASRlEHAKRYCIIGISSAVMMA 329 Anoxybacillus f...
YP_002886620 250 LAIFAEVSIFAAVTVLLSSYGDQIVAAHQAAINFASFVYMLPLSASsALTIVVGYELGAKRlQDAVRYAKIGLALCLGVS 329 Exiguobacterium...
YP_001812974 250 LAIFSEVSIFSAVTLLLGAYGDVVIGAYQAAINFASFVYMIPLSAAsALTITVGFEMGAKRvKDAVQYVWIGLLLCLVVS 329 Exiguobacterium...
YP_147442    250 SAIFFETSIFAAVTLLVGRFGAETVAAHQSALNFASLLYMIPLSLSmALTIAVGVEAGANRyEAAKQYCLIGITLALAVA 329 Geobacillus kau...
EEX68645     253 STMFCEQSIFSAVGLFMTVYGTTVVAAHQAAMNFTTLVYMIPLSASmTLTILVGFEIGARRsEEAAAYIRLGRLLTFVFE 332 Mitsuokella mul...
EEW96549     247 LSVFMEMGLFGAIIIFMARFGTETLAAYQVADNFANMAYMVPLSCSmALTILVARAAGAKDhALARRYAKAGILMSVGFS 326 Dialister invis...
Feature 1                                             #   #                          #           
3MKU_A       329 CITALLTVLFREQIALLYTENQVVVaLAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTaIFHRTFISYWVLGLPTGYIL 408 Vibrio cholerae...
Q8DPQ6       329 AFTLTFLYIFRGNVASLYGNDPKFIdLTARFLTYSLFFQLADTFAAPLQGILRGYKDTViPFYLGLLGYWGVAIPVATLF 408 Streptococcus p...
NP_465371    330 CVNGAILFFFRDIIAGFYTNDPALSnLIMHFLVYAILFQFADAVLSPVLGALRGYKDVTvTSIVAFISYWLIGLPVGYGL 409 Listeria monocy...
YP_001698443 338 FISACILFIFREPVAHMYTTDSNVIeYAVQFLVFAAIFQLSDSIQAPVQGALRGYKDVMiTFIMAIISYWVIGLPVGYLL 417 Lysinibacillus ...
YP_002315741 330 IVASIVLLLFREPIAFLYTNDEHVLqWTKQFLLYVLFFQFSDAIAAPIQGALRGYKDVRfPFFIALVSYWFVGLPVGYIF 409 Anoxybacillus f...
YP_002886620 330 IFSGAFLFWQNERVAAIYTNDPTVVdLAAHFMIFAVFFQLSDAVAAPIQGILRGFKDVNiTLVLSLVAYWVIGLPLGYVL 409 Exiguobacterium...
YP_001812974 330 LFSGGLLYVQNERIAALYSNDPAVIkMAAHFMILAIFFQLSDAVAAPTQGALRGFKDVNvTFILTITAYWVIGLPLGFYF 409 Exiguobacterium...
YP_147442    330 AAAALFLSAFRSHVARLYTNDPTVAaLTGKFLLYAIFFQVSDAIAAPIQGALRGYKEVNaVFWSALLAYWGVGLPLGCAL 409 Geobacillus kau...
EEX68645     333 GSLAILLVQFRETIAALYTSSPDVQeLLVVFLVFAVFLQLADSIDAPLQGALRGYKDVHvTFLLAVISYWVIGLPAGWLI 412 Mitsuokella mul...
EEW96549     327 AAEVLLTTIFREQIGLVYTDDAAVIaIASQFLIFASGFQFFDSISAPVQGILRGYKDAKvPFILLLAAYWGACFPVALFL 406 Dialister invis...
Feature 1                           #   #                 
3MKU_A       409 GMTnwlteqpLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ 449 Vibrio cholerae O1 biovar El Tor str. N16961
Q8DPQ6       409 DSLt-----dFGAYSYWIGLIISLIVSGALYRWRLTVIMKR 444 Streptococcus pneumoniae D39
NP_465371    410 SFTn------LGPFGYWIGLSTGLFVAAFILSIRVRKTEQK 444 Listeria monocytogenes EGD-e
YP_001698443 418 ATHt-----dLGPFGYWIGLVAGLTTGAATLLIRLLLVQKR 453 Lysinibacillus sphaericus C3-41
YP_002315741 410 AHYt-----tAGPFGYWIGLITGLASGAILLFVRLRQKWKH 445 Anoxybacillus flavithermus WK1
YP_002886620 410 AEHa-----gFGPDGYWIGLIAGLAAGAVLLFLRLVWIVRR 445 Exiguobacterium sp. AT1b
YP_001812974 410 ERFt-----eLGPDGYWWGLIIGLAVGASLLLLRLMHLVRK 445 Exiguobacterium sibiricum 255-15
YP_147442    410 ALLt-----aAGAFGYWIGLIAGLATGALFLSFRLRAVWRR 445 Geobacillus kaustophilus HTA426
EEX68645     413 ANYt-----sVGPYGYWCGLIIGIAFGAIFLSLRLRAVQKR 448 Mitsuokella multacida DSM 20544
EEW96549     407 DHQl-----dMAAVSYWIGLDVGVAASAVFMAIRLFTLESG 442 Dialister invisus DSM 15470

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