Conserved Protein Domain Family
YbeY

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pfam02130: YbeY 
Endoribonuclease YbeY
YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. It acts together with the RNase R to eliminate defective 70S ribosomes, but not properly maturated 70S ribosomes or individual subunits, by a process mediated specifically by the 30S ribosomal subunit. It is involved in the processing of 16S, 23S and 5S rRNAs, with a particularly strong effect on maturation at both the 5'-and 3'-ends of 16S rRNA as well as maturation of the 5'-end of 23S and 5S rRNAs. The crystal structure of the protein from Aquifex aeolicus showed an overall fold consisting of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices.
Statistics
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PSSM-Id: 460455
Aligned: 208 rows
Threshold Bit Score: 71.7318
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EdlabUofT:DCF50_p2552  14 EDEQNKIAKL--LRAGI-------QkallegggqddaEIGLVLTNDESIHLLNKTYRGIDSPTDVLSFALREKGEGepei 84 
CAM38635               17 REVRHLINLLltLEHAPyd-----------------tRLNLEFVSLAYMRQINCKYKESDRPTDVLTFTSVGKADrfvnh 79 
WP_012911465           15 IDKKLLSSAV---RKVLalgeiksA------------EISVAVVDGDEMHQLNRQYLQHDYTTDCLSFVLDFEDDHl--- 76  Pirell...
WP_013110491           15 IDPKPIQTLL---KHVFetegfpeA------------EISIALVDNQQIHKVNRDFLNHDYPTDVISFVLNGSEDSvshn 79  Planct...
CCB85992               14 LPKTSIKKIV---QEVIhlenelcH------------EVIIHFISDKKMRELHAQYFNDPSPTDCISFPLDGPEEThy-- 76 
O84429                 22 IDLQSAQRLV---VLFLelqkvstD------------QVYVYFLDDTALAQLHDEQFSDPSPTDTITLPIDKPGIAsfp- 85  Chlamy...
Q6MCC1                 16 FSLANLDAIV---KEVIqkeqqtcD------------EVNIYFVDTATICKLHLDYFNDDTPTDCISFPMDKDENSpy-- 78  Candid...
WP_013182111           14 ISVLQVEKLV---IECLklegvecD------------EVSIQFVDTQMICDLHHRFFNDPTVTDCISFPIDQDGDTgy-- 76  Waddli...
XP_001610354           69 IDEKLIYDTCwlYRNELgfp---------------dfQVDVIFLDTKEMTECNSNHFGKHHATDIISLAENSlytkdkyn 133
Q4N8Y6                101 VDCLMLFKAAkcYKQELevd---------------dfMLDIFIEDEKNMKRINFKQLGGDGPTDIISIrddllylrsdfh 165 Theile...
EdlabUofT:DCF50_p2552  85 yfnpqsdkdkkerleysleeiideeddkdldeyeednfeeyeeddddlsycdttLGDIVISVERARSQAIAY-GH--SFA 161
CAM38635               80 llfsdpleggdddegthaalat------srecgvavaagptvlkksairaelvdLGDIFVSLDYMRLRCRRYpSTtlPLA 153
WP_012911465           77 ------------------------------------------------------EGEVIVSADYAAQESLQY-GW--RME 99  Pirell...
WP_013110491           80 hdha------------------------------------------dpdfpeplIGEVIVSVETAAGMAAEN-NW--CIA 114 Planct...
CCB85992               77 ----------------------------------------------------rvLGEIFVCPETAVKYTEQH-GG--DPY 101
O84429                 86 ----------------------------------------------------hvLGEAFVSPKAAMRFLEQYtED--QLY 111 Chlamy...
Q6MCC1                 79 ----------------------------------------------------kiLGEIFVCPQTAIEYALSH-EL--DPY 103 Candid...
WP_013182111           77 ----------------------------------------------------rvLGEVFVCPKTGIDYAQEH-LK--NPY 101 Waddli...
XP_001610354          134 lnr-----------------------------------------spqlvadfrnLGEINMCPDYIYKQMIG--------D 164
Q4N8Y6                166 k-----------------------------------------nrspqkpsqhyhLGEIFLCPGFIKGVIDS--------E 196 Theile...
EdlabUofT:DCF50_p2552 162 REIVYLAVHGTLHLLG--------YDHGSEEDSSV-MRRLEEQVMDQL 200
CAM38635              154 PYLHAALVHATLHALG--------YDHKNPELLQH-MARREQQLGRQL 192
WP_012911465          100 DELLLYVIHASLHLIG--------HDDHEESDIAK-MREAEKQILAQF 138 Pirellula staleyi
WP_013110491          115 SEVLLYCLHGSLHLCG--------YDDLVASERNR-MRERERFYLLpl 153 Planctopirus limnophila
CCB85992              102 TETALYTIHGLLHLMG--------YDDIKKTDQKA-MRAAEKKHLEHL 140
O84429                112 HEISRYVVHSLLHMLG--------YDDQTDEDKRI-MQEQEDVSLSfl 150 Chlamydia trachomatis D/UW-3/CX
Q6MCC1                104 EETTLYLVHGLLHLMG--------YDDLEENDFLI-MKEAEIRHMTHL 142 Candidatus Protochlamydia amoebophila ...
WP_013182111          102 EEISLYIIHGLLHLMG--------YDDIGEDEPR--MREAEKRHLAHL 139 Waddlia chondrophila
XP_001610354          165 QEYS---NQGVCQIKAdkhcdenaYDHVEDNDFEE-MLLQEDRLLDVF 208
Q4N8Y6                197 NKLGLKTPEKFEKSLNvg----krYDHE-KEEWFNkMAGMEDVLLDAF 239 Theileria parva
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