Conserved Protein Domain Family
PRK12543

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PRK12543: PRK12543 
RNA polymerase sigma factor; Provisional
Statistics
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PSSM-Id: 183582
Aligned: 29 rows
Threshold Bit Score: 249.65
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
226311235   1 MREGDQEAFEVIYSMTRTKVYGTVAAMV-TNKEDVHDIVSEIYYQLWRSLPAYDHKRPFLFWVNGIVIRQVNNWRRQIWR 79 
218903264  14 TLSGNKEAYSELYDVTIQEVYKTVHFLI-EDKTDVDDVVQEIYIQLYESLRKYDSEKPFRPWLIGLAIKQIHSYRRKRWM 92 
218904082  13 MESGDQEAFQIIYEYTCKDIYRTVVFLVgSQNQDVDDIVNEVYIKMWKSVTNYDMNRSFRFWLHGLVVKQVQDWRRKSWR 92 
163943299  14 LLSGDEEAFEYIFDLTNQRIYDTVFAIV-KNGHDTNEIVNEVYFQLWKSISKYDQSRPFLFWLNGIVYKQISQWRKQVWK 92 
161486563  13 MESGDQEAFQIIYEYTCKDIYRTVVFLVgSQNQDVDDIVNEVYIKMWKSVTNYDMNRSFRFWLHGLVVKQVQDWRRKSWR 92 
49185764   13 MESGDQEAFQIIYEYTCKDIYRTVVFLVgSQNQDVDDIVNEVYIKMWKSVTNYDMNRSFRFWLHGLVVKQVQDWRRKSWR 92 
161611198  13 MESGDQEAFQIIYEYTCKDIYRTVVFLVgSQNQDVDDIVNEVYIKMWKSVTNYDMNRSFRFWLHGLVVKQVQDWRRKSWR 92 
227814227  13 MESGDQEAFQIIYEYTCKDIYRTVVFLVgSQNQDVDDIVNEVYIKMWKSVTNYDMNRSFRFWLHGLVVKQVQDWRRKSWR 92 
229602282  13 MESGDQEAFQIIYEYTCKDIYRTVVFLVgSQNQDVDDIVNEVYIKMWKSVTNYDMNRSFRFWLHGLVVKQVQDWRRKSWR 92 
49477520   14 TLSGNKEAYSELYDKTIQEVYKTVHFLI-EDKTDVDDVVQEIYIQLYESLRKYDSEKPFRPWLIGLAIKQIHSYRRKRWM 92 
226311235  80 RFRLLERKQSLEEEQHVETPDEpMLAMESATEMQQAIQKLPFKLRIVVIYRYYYDYTYDQIAELLQIPVGTAKSRNHLAL 159
218903264  93 RLRIIKKAEEQRKPVQIDFSND-VVSKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAAL 171
218904082  93 RFRIFEKKKMYEQDRSYIMDEA-ILHKETRSELVEVVQNLSYKHREVVIMRYFHEYSLDEIAALLQIPIGTVKSRLHTAL 171
163943299  93 RMRLFEKQHSMQESV-VEIPEKlLLEKETQKELLTLIQELPFKFRVVIVYRFYHDYTYEEIAELLQIPIGTVRSRIHRAL 171
161486563  93 RFRIFEKKKMYEQNRSYIMDEA-ILHKETRSELVEVVQNLSYKHREVVIMRYFHEYSLDEIAALLQIPIGTVKSRLHTAL 171
49185764   93 RFRIFEKKKMYEQNRSYIMDEA-ILHKETRSELVEVVQNLSYKHREVVIMRYFHEYSLDEIAALLQIPIGTVKSRLHTAL 171
161611198  93 RFRIFEKKKMYEQNRSYIMDEA-ILHKETRSELVEVVQNLSYKHREVVIMRYFHEYSLDEIAALLQIPIGTVKSRLHTAL 171
227814227  93 RFRIFEKKKMYEQNRSYIMDEA-ILHKETRSELVEVVQNLSYKHREVVIMRYFHEYSLDEIAALLQIPIGTVKSRLHTAL 171
229602282  93 RFRIFEKKKMYEQNRSYIMDEA-ILHKETRSELVEVVQNLSYKHREVVIMRYFHEYSLDEIAALLQIPIGTVKSRLHTAL 171
49477520   93 RLRIIKKAEEQRKPVQIDFSND-VVSKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAAL 171
226311235 160 KRIREWIDVewnEEELQTCLSKKS 183
218903264 172 KKLRQKEQI---EEIFLGEVGNVK 192
218904082 172 KRLRMEMEQ---MPNEREEEVNGF 192
163943299 172 EKIRNQSNIeidEEEYNSNVIFK- 194
161486563 172 KRLRMEMEQ---MPNEREEEVNGF 192
49185764  172 KRLRMEMEQ---MPNEREEEVNGF 192
161611198 172 KRLRMEMEQ---MPNEREEEVNGF 192
227814227 172 KRLRMEMEQ---MPNEREEEVNGF 192
229602282 172 KRLRMEMEQ---MPNEREEEVNGF 192
49477520  172 KKLRQKEQI---EEIFLGEVGNVK 192
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