1UNN,1JQJ,1VPK


Conserved Protein Domain Family
beta_clamp

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cd00140: beta_clamp 
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Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Statistics
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PSSM-Id: 238082
Aligned: 111 rows
Threshold Bit Score: 82.5583
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1UNN_A      1 MKFTVEREHLLKPLQQVSGPLGGR-PTLPI-LGNLLLQVAD-GTLSLTGTDLEMEMVARVALvq----pHEPGATTVPAR 73  Escherichia coli
Q50313      1 MKVLINKNELNKILKKLNNVIVSNnKMKPY-HSYLLIEATE-KEINFYANNEYFSAKCTLAEni---dvLEEGEVIVKGK 75  Mycoplasma pneumoniae
NP_077909   1 MEVFISIKKLIEAIKFSTTIANTN-NANAL-LLGVLIEVSQ-NKISFKTTNNQVSGYKEITEgf---eyFNSGKVLVTAK 74  Ureaplasma parvum ...
Q98RK6      1 MKLFLEKSRFLRFLENTTKIIESN-NSNYE-LRGAYFQVRQ-DKIILISSNEDISIKNEYLLdgiknktEGESDFLVLNS 77  Mycoplasma pulmonis
NP_603433   1 MHIKVNRQNFLSAIRIVEKSVKEN-KIKPI-LSCIYAKVKG-NKIYFTGTNLDTTIKTSIDVne----vIREGEVAFYYS 73  Fusobacterium nucl...
NP_757388   7 MKIIVSKTKLINALRLCNSISENI-FSSPV-FLGTLIEVND-NEIKFTTSNGIISTHSIVAKsed-aniLEKGRILIKTK 82  Mycoplasma penetra...
AAP57076    8 MKFFTSKSSFLEAIKFSSNFSSDN-NFEQL-LKNLYIKIDN-KECKIYSSNGQVSSIYKIEDdi---dvEEEGEVIVNAK 81  Mycoplasma gallise...
NP_950254   1 MYLEINKDIFLEQLLKIQKILPQK-TFFPI-FNALKIQTQE-NNLILEANNGNIAIKIEIKDesl--kiKKQGKIACLGR 75  Onion yellows phyt...
YP_015699   1 MKIKSNRRTLEKILDIFNPTIDST-NPFPA-LLGLYFDVNE-STTTIISSNGDVSIKHKIVSnen-fkiIEPGILLIPSS 76  Mycoplasma mobile ...
YP_115517   1 MKFTIEKKIIEWQIERMQSAILNN-VNSPLsSFFLKLTRSGlFIISTNSELSYKVFINKKDLie----iYDVGSCLIDGV 75  Mycoplasma hyopneu...
Feature 1     #  #                          # #                                               
1UNN_A     74 KFFDICRGLpegaEIAVQLeg-erMLVRSGRSRFSLSTLPAADFPnlddw-----qsevEFTLPQATMKRLIEATQFSMA 147 Escherichia coli
Q50313     76 IFSELINGIke-dIITIQEkd-qtLLVKTKKTNINLNTIDKKEFPrirfnqnvdlkefdELKIQHSLLTKGLKKIAHAVS 153 Mycoplasma pneumoniae
NP_077909  75 IILGLISKLkdksVLLKQIdt-niLLIKTENFETQINTMNIEGFPnlnfs----ledyvKISLPHQIMQEINTKVLPNVL 149 Ureaplasma parvum ...
Q98RK6     78 LLKNIIKKCs--dSIILEKek-ntLKIFSDLQSYEINLLDHERFPdikfg-----lnnsQLQLKTEQFKQALKNVVFAAD 149 Mycoplasma pulmonis
NP_603433  74 IIDEYLKEIkd-eFVVLRVengniLFIETEDSTTEYDVFSAEDYPntfeniv-lnennfKFEMPSQELVNIFEKVLFSAD 151 Fusobacterium nucl...
NP_757388  83 PFFAIISKLkn-eMITLEKvdnsvIKVKTSTFDSNINIMDEEQYPninfs----yndwnQLSISPIVFKKSISKVKYAVN 157 Mycoplasma penetra...
AAP57076   82 KLITIIQSIvs-dNFTLAKld-nqLIIRAGKMQTSLNLEEDVSYPeieid----dsnfsVIDVDSFLFAKSIKKVIHSTS 155 Mycoplasma gallise...
NP_950254  76 YFIEIIKKIsd-sLIKITVmennfLVIKTSFCEYKLKLMDVCNFLeldfs----fqkldSFQIETHFLKNMIKEINISTS 150 Onion yellows phyt...
YP_015699  77 LFRNIIKKId--gEVFIRNeg-liLYLENEGNIYTINCLESENYPkidfn----lidhkKVVINSSFIRDVIKNVSFASS 149 Mycoplasma mobile ...
YP_115517  76 FLRDVIRKSd--kQLSFHLig-seLKVFWEDAIFSKTTRDSSFFPeinfe-----qkgiKLTVNAKNFKRAIKNTAFATT 147 Mycoplasma hyopneu...
Feature 1                                                                                     
1UNN_A    148 h---qDVRYYLNGMLFETEG--EELRTVATDGHRLAVCSMPigq----slpSHSVIVPRKGVIELMrmldg-gdnpLRVQ 217 Escherichia coli
Q50313    154 tf--rESTRKFNGVNFNGSNg-KQIFLEASDSYKLSVYEIKqk------tdPFNFIVETNLLSFINsfnpe-ggdlISIF 223 Mycoplasma pneumoniae
NP_077909 150 nsqgiEKIQPISGILIDTQTleNKLIAIGTDKIKASCLIREymge---kfkFIVSYSTMKLIIEILknveysnnqtVDFY 226 Ureaplasma parvum ...
Q98RK6    150 ls--nAQELLLNSVNLSLKN--NILTLVATNRARIAMQKIKted-----sqEFNLTINSKVVKELIsls-----msNTLI 215 Mycoplasma pulmonis
NP_603433 152 t----PDNIAMNCIRIESIL--KHLHFVSTNTYRLTFLKKNidk----disDFSVSVPADTISSIIkiikgldnevIKIY 221 Fusobacterium nucl...
NP_757388 158 nn--kEKINIMSGICFNSISseKTLEIIATDGYKLAHYKFEst------pqDFRIVLDVSLIELLLeiid--fdtnIEIF 227 Mycoplasma penetra...
AAP57076  156 fq--tTKNSISSAINFQKEAddMNIWITGSDAIKLSSCYYKvndtedalkaKFNFSVNALSLSYVAaflkdkdqllLKIS 233 Mycoplasma gallise...
NP_950254 151 k---nEKRPILMGLNLIYQN--NLLKACATDSFRMSQKKINldi----eyhNFNIVIPNKSLEELSkilehcqskyLKIY 221 Onion yellows phyt...
YP_015699 150 ss--eTNNLVLSGVNFNLNL--NKIIATATDSFRLAQESSStlt-----ngDFNITITAKNLRDLFsnln---sekVELL 217 Mycoplasma mobile ...
YP_115517 148 n---nPSQPILSAINLRSEA--GFLHFSATDTTRFASEKIEisn-----ksRINISVSAKNLKDFIppel---dkdIELN 214 Mycoplasma hyopneu...
Feature 1                                                                    #                
1UNN_A    218 Igs-------nnIRAHVGDFIFTSKLVDGRFPDYRRVLPKN--PDKHLEAGCDLLKQAFARAAIlsn-----ekfRGVRL 283 Escherichia coli
Q50313    224 FrkehkddlsteLLIKLDNFLINYTSINESFPRVMQLFDFE--PETKVTIQKNELKDALQRILTlaqn----erfFLCDM 297 Mycoplasma pneumoniae
NP_077909 227 Vrs-------rsLIFKINDAILQTRMIDGVYPNIYSIFDETn-EENTYVFDRRLLIEIIERGMNivmq----eqnPKISI 294 Ureaplasma parvum ...
Q98RK6    216 Lspg-----tfeLKIKSGNLEIKTKVIEIPYMNVENVFPNK--FNFVIHIDKKELLSLIDKVSIvnde----kngNKILI 284 Mycoplasma pulmonis
NP_603433 222 Ked-------ahLYFQYKDTMIITKLIELRFPNYAEILSNIs-YDKKLHMNNDKLTNLLKRILIfsrsnseskysSTYEF 293 Fusobacterium nucl...
NP_757388 228 Lfe-------snIIFKVSNTIIASKIIEGDYPNVSRIIATP--KENKVNISKKTLVEALERGLAisss----ekkSIVKL 294 Mycoplasma penetra...
AAP57076  234 Kks-------dkVVLTNNKFVLYLRVENEPFPEFKKILNANk-VVSSFVVDKDLISNNLHALTGvlslsdqgknnADANF 305 Mycoplasma gallise...
NP_950254 222 Sdt-------qkIFLEIDNLWFQTSLLEGNYPQIQEIKLTN--FPFSVHLNKDDLMKALERVSLlfske--qmntNVIKF 290 Onion yellows phyt...
YP_015699 218 Ide-------ykINIIDENTIFQAKLINMPYIDVTKIIPKN--FEKKLYIEKRVLNNYLNKAMVvln-----erySAIDV 283 Mycoplasma mobile ...
YP_115517 215 Ies-------skISYIYDNLTIQSRIFTIEYKDISNILPKDseILYSLTINKRDILDLIDKTTIitp-----gkdNVINL 282 Mycoplasma hyopneu...
Feature 1                              ##                                                     
1UNN_A    284 YVSe----nQLKITANNpe--qEEAEEILD----------VTYSgaem-eigFNVSYVLDVLNALKCENVRMMLTDSv-- 344 Escherichia coli
Q50313    298 QVTn----sHLKINSNVqn--iGASLEEVTc---------LKFEghkl-niaVNALSLLEHIDSFDTDEIELYFQGSn-- 359 Mycoplasma pneumoniae
NP_077909 295 RIDk----nEAEISLTTfe--iGNMKEKMSi---------VNLNnksa-efiLNPSLLAHVLKNFDNNDVTFKVKDEi-l 357 Ureaplasma parvum ...
Q98RK6    285 EYNpskkekKLKLSSYWp---dLGFSEVFSd--------nFEVEseillkffINANYLKESINVFDGMISIFITENK--- 350 Mycoplasma pulmonis
NP_603433 294 KHNeen-knKMAISALNe---iARINEELD----------VNFEgedl-kisLNSKYLLEFIQNIPKEKELVLEFMYs-n 357 Fusobacterium nucl...
NP_757388 295 NFSs----eVLEVSFSSsd--lGNSKETVSc---------KGKVnept-pisLNNHFLLSLLKTFDNDNITVEFSDSf-- 356 Mycoplasma penetra...
AAP57076  306 EILk----nTLRISTNSfd--iASYNSEFDi---------SEFQgevk-dinLNPFYLQEHIKMFESKDIEFKLLLQsai 369 Mycoplasma gallise...
NP_950254 291 ILTkq---nSIEISSSSes--lGTALEKIIp---------LKVSansf-qiaFNAKYLEDVLKVLSVKEVVFYFDNPl-- 353 Onion yellows phyt...
YP_015699 284 SISn----eEIIFTSQRke--vGATKLVLKnd-------sFTFEgtpi-kirLNSRFIKEAINVFENNIEILMNSSE--- 346 Mycoplasma mobile ...
YP_115517 283 SMSkn--alKGYISQYDsgqsnVQTKNVLDfrfnprfasdFRFDpela-qvnINYRYLKDAISVFDKVIDIHINEKMn-- 357 Mycoplasma hyopneu...
Feature 1                                
1UNN_A    345 SSVQIEDaa------sqSAAYVVMPMR 365 Escherichia coli
Q50313    360 KYFLISSnn------epELKEILVPSK 380 Mycoplasma pneumoniae
NP_077909 358 RPIIFIDtk------dvGFKQILSRIK 378 Ureaplasma parvum serovar 3 str. ATCC 700970
Q98RK6    351 DRMVISSet------nlNNKQLIAALR 371 Mycoplasma pulmonis
NP_603433 358 SAVKVYEkd------ndEYIYILMPLA 378 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
NP_757388 357 KPVLLRDek------dpNFLQILVPIR 377 Mycoplasma penetrans HF-2
AAP57076  370 SGCILKVceknndqfklKFVQVLAPSS 396 Mycoplasma gallisepticum R
NP_950254 354 KPFIITTle------kdSSIHLILPIP 374 Onion yellows phytoplasma OY-M
YP_015699 347 KPVLIKDkd------sfNNLQLISPLR 367 Mycoplasma mobile 163K
YP_115517 358 KMLIVSPek-------pEICQLVGLVL 377 Mycoplasma hyopneumoniae 232

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