1JI0


Conserved Protein Domain Family
ABC_TM1139_LivF_branched

?
cd03224: ABC_TM1139_LivF_branched 
Click on image for an interactive view with Cn3D
ATP-binding cassette domain of branched-chain amino acid transporter
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Statistics
?
PSSM-Id: 213191
Aligned: 101 rows
Threshold Bit Score: 244.651
Created: 13-Dec-2004
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:ATP bound; 3.5A contacts

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                          ## ###                                       
1JI0_A        7 LEVQSLHVYYGaihAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGlvraqkGKIIFNGQDItnkpah-----vinrx 81  Thermotoga maritima
NP_285647     2 LKLEHVSAAYGqspVLFDIDLEVRDAEAVALIGRNGVGKSTLLRTISGlhpvtaGGVRLGGEAVehapaf-----arara 76  Deinococcus radi...
NP_535905     2 LTLKNVHSYYGrshILHGVTLDVPTGKVTSILGRNSTGKTTLLKTLMAltdgmtGEMHLQGQDIssspth-----mrara 76  Agrobacterium tu...
NP_600162     2 LEITNLCAGYGrtqVLHSLSISTSSNGILSILGHNGAGKSTLLRTAVGlikptsGEVKLFGQDVtslsth-----ervkr 76  Corynebacterium ...
NP_766833     5 LDIKHLDAGYGrsqVLFDVNLGIPWRGGVAVLGRNGAGKTTLMKTIVGelpawkGEVAFDGRDIsrratq-----ervra 79  Bradyrhizobium j...
NP_947757     7 LNTVGLRAGYGgkpVLQGLEIEVREGEIIAVIGRNGVGKSTLMKSLIGlipamdGSIVFRGEPIehlpaf-----krarl 81  Rhodopseudomonas...
AAR38444    613 LELKNIDTFYGkshILNSVSLDVSKGEVVALLGRNGAGKSSTLKSIMGiapiskGKILFNGREIqnmtpe-----qvarv 687 uncultured bacte...
NP_992379     2 LSLTAVNQYYGnnhILWDINLELPRGQCTCLIGRNGVGKTTLINCIMGhlpiksGTMIWQPHHEppqnlqqqpverrnal 81  Yersinia pestis ...
ZP_00281806   6 LDLQDVTSGYKasvVLRKLSMTVANGEAVAVLGKNGMGKTTLLKTIMGylpkkgGAIHVHGRDItrlpph-----qiara 80  Burkholderia fun...
YP_134535     3 LELDEVSAAYDttpILRDVDLSVEEEEIVGVMGKNGVGKTTLLKTVMGllepseGTISYDGTDVthasad-----erara 77  Haloarcula maris...
Feature 1             #                                                                         
1JI0_A       82 GIALVPEGRRIFPELTVYENLXXGaynrk-dkegiKRDLEWIFSL-FPRLKERlKQLGGTLSGGEQQXLAIGRALXSrPK 159 Thermotoga maritima
NP_285647    77 GLAYVPQGRGLFSHLTVEENLLMGlsalggrpatkKEIPPLVYDL-FPICHDMrARKAGNLSGGQQQQVAIGRALVTrPA 155 Deinococcus radi...
NP_535905    77 GIAYVPQGREIIPDFSIRENILMGafar----adrKREIPALVPElFPYLMANlDRPGGVLSGGQQQQLAIARALAAdPK 152 Agrobacterium tu...
NP_600162    77 GMAYVPQGQQSFTQLSCMENLQVVadlq---grvgKARIAEALDR-FPALTQVlDRQAGLLSGGQRQQLAIARALITaPK 152 Corynebacterium ...
NP_766833    80 GIGYVPQEHSVFARLSVRDNLAVGsla-----sskADAVDHVLSI-FPKLGQRlDQPAGTLSGGERKMLAIGRAMLGdPK 153 Bradyrhizobium j...
NP_947757    82 GIGYVPQGRDVFPRLSVAENIAVGasik---grltEQQRREVVDT-FPILGERwSQRAGTMSGGQQQQLAIGRVLVAdPE 157 Rhodopseudomonas...
AAR38444    688 GVGLVPQGRRLFSNLTVEENLKVGglqrt-gdsgvTWPMERIVEK-FPRIKDRlHARADTLSGGEQQMVAIARALSGnVE 765 uncultured bacte...
NP_992379    82 GIGYVPQGQQIFSQLSVEDNLLVAvlag---rhksHPIPGWVFEL-FPLLHDKrSQRGGELTRNQQQQLAIARALVAePE 157 Yersinia pestis ...
ZP_00281806  81 GIAYAPQEHALFQDLSIRDNLRLGlsnv----svfEERFAGIEPV-FPVFKSRlRQYAGTLSGGEQKMLLVARALMTrPS 155 Burkholderia fun...
YP_134535    78 GIGYIPQGRDVFPKLTVEQNIKMGetir---sesdETLYDQIYDY-FPVLEERaSQEAGTLSGGQQQMLAIGRALVSnPD 153 Haloarcula maris...
Feature 1           ##                                #                                
1JI0_A      160 LLXXDEPSLGLAPILVSEVFEVIQKInq-eGTTILLVEQNALGALkvAHYGYVLETGQIVLEGkaSELLDN 229 Thermotoga maritima
NP_285647   156 YLLLDEPTEGIQPSIVQDIEAALGRIraelRVAVLLVEQYLDFAWafADRYYVLQRGRVVESGltADVQPS 226 Deinococcus radiodurans R1
NP_535905   153 VLLLDEPNEGIQPSIVEEIEKIIIRLnreiGMTIVLVEQNVAFARhaSHHFAMLEKGGVVAAGaiDALSDT 223 Agrobacterium tumefaciens...
NP_600162   153 LLLLDEPTEGIQPSVVAEIQQTIIDLak-dGMSIVLVEQNIGFALdaATSYAIVARGQVVESGqgAETTAE 222 Corynebacterium glutamicu...
NP_766833   154 LLLLDEPTEGVWIGVIEEITERLIELa--kEIAVIIVEQHLDLALrvADYAYVLDRGRVALQGeaGEVRGN 222 Bradyrhizobium japonicum ...
NP_947757   158 LILLDEPSEGIQPNIVQDIARDMVALnaktGVTIILVEQNLDMIRamAQRCYVMDKGRIVADLdrAALDDE 228 Rhodopseudomonas palustri...
AAR38444    766 MILMDEPFEGLSPTMIEELFESINDLr--sEVSLLIIEHQLDLVLalADRAFILDRGVVSHEGptRPLLED 834 uncultured bacterium 582
NP_992379   158 LLILDEPGSGTSPALSEDISTVLHQLsrnlGMTLLLVEHRLPFIQhiADRFCLMAGGRNVAQGtlDQLNEG 228 Yersinia pestis biovar Me...
ZP_00281806 156 IILLDEITEGLQPSVIDRLADALLWErkqhGTTLLLIEQNVPFALkvADRYAVLKQGEVIEHGnaKDETAE 226 Burkholderia fungorum LB400
YP_134535   154 LLLLDEPSEGIQPSIVDQISQDMQTInddlGTTILFVEQNLGVIRemADRCYAMERGTVVDELgpSTIADE 224 Haloarcula marismortui AT...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap