3NH0,2F96


Conserved Protein Domain Family
RNaseT

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TIGR01298: RNaseT 
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ribonuclease T
This model describes ribonuclease T, an enzyme found so far only in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases. [Transcription, RNA processing]
Statistics
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PSSM-Id: 188129
Aligned: 5 rows
Threshold Bit Score: 372.245
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3NH0_A        30 LCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGA 109 Escherichia col...
WP_023088127  22 MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMA 101 Pseudomonas aer...
O54364        13 LKHRFRGYLPVVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGA 92  Mannheimia haem...
WP_031336485  13 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTGIILDHPFRFA 92  Xylella fastidiosa
2F96_A        22 xARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRXA 101 Pseudomonas aer...
3NH0_A       110 VSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMM-AAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKAC 188 Escherichia col...
WP_023088127 102 VQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLN-AAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKAC 180 Pseudomonas aer...
O54364        93 VAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYrAAIKRINAKRDPFHPFAMFDTATLAGFMYGQTVLVKAC 172 Mannheimia haem...
WP_031336485  93 KEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLN-AAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAV 171 Xylella fastidiosa
2F96_A       102 VQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLN-AAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKAC 180 Pseudomonas aer...
3NH0_A       189 QTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPL 229 Escherichia coli K-12
WP_023088127 181 QAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWMD 221 Pseudomonas aeruginosa
O54364       173 QVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPP 213 Mannheimia haemolytica
WP_031336485 172 QAAGLDWNAADAHSAVYDAEKTAHLFCTITNTWPLVVAG-- 210 Xylella fastidiosa
2F96_A       181 QAAGXEFDNREAHSARYDTEKTAELFCGIVNRWKEXGGWxd 221 Pseudomonas aeruginosa PAO1
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