3C60,1R5V


Conserved Protein Domain Family
MHC_II_alpha

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pfam00993: MHC_II_alpha 
Class II histocompatibility antigen, alpha domain
Statistics
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PSSM-Id: 460019
Aligned: 81 rows
Threshold Bit Score: 63.7479
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3C60_G           4 DHVGTYGISvyqSPGDIGQYTFEFDGDELFYVDLDKKETVWMLPEFGQLASFDP---QGGLQNIAVVKHNLGVLTKRSNS 80   house mouse
XP_011484642    26 EDFGILGCS-----DYDQEYMYALDGEEKWYADYKKETGVGPQLPLGGHFINPDg-yQFAKVYEQVCRRNLKALKKTTKG 99  
XP_014331012    23 DSFRVIGCS-----DTDGLDMMTLDGEEVWHADFIHETGVDTLPDFVSHPSFSGl-yEQSVGQQQLCKNNLKIIRTGLKD 96  
6_pfamImport     1 EDIGITGCS-----DLDGEDMFGLDSEERWYADFSKGEGVYGTPPFIDPVTFEGf-ySQAVADLQTCKTSLDITRKSLKD 74  
XP_029695925    22 EDIGITGCS-----DLDGEDMFGLDSEERWYADFSKGEGVYGTPPFIDPVTFEGf-ySQAVADLQTCKTSLDITRKSLKD 95  
CAF91234        21 EDVHIRGCS-----DFDGEDMYGLDGEERWYADFKRGEGVYALPDFVDPLKFPEgtySQAVADQQICKINLGISRKGNKD 95  
XP_019210807    23 GDVHINGCS-----DFDAEDMYGLDGEEVAYADFNNHTEVYILPPFAEPMIYPGa-yKQAVTELKVCRHNLKALRAVMKD 96  
XP_019210809    23 GDVHINGCS-----DFDAEDMYGLDGEEVAYADFNNHTEVYILPPFAEPMIYPGa-yKQAVTELKVCRHNLKALRAVMKD 96  
12_pfamImport    1 IDINVIGCK---SDDPVAQDEAQLDGDEMFYADFDKKEMILTLPAFADSFGVDPgwvQGAIANRQICINNLEVAIKAENN 77  
CAF90147        21 EDIRIVGCS-----DFDGEYMYGLDGEELWYADFRRGEGVYAQPDFIDPLKYaEdpySLAVATLQMCKFNLGIFRKGYKD 95   spotted gree...
3C60_G          81 TPAT 84   house mouse
XP_011484642   100 LQLE 103 
XP_014331012    97 IPDP 100 
6_pfamImport    75 MPPE 78  
XP_029695925    96 MPPE 99  
CAF91234        96 MPRE 99  
XP_019210807    97 YPSN 100 
XP_019210809    97 YPSN 100 
12_pfamImport   78 PPEN 81  
CAF90147        96 MPRE 99   spotted green pufferfish
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