1D9U


Conserved Protein Domain Family
lambda_lys-like

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cd00736: lambda_lys-like 
Click on image for an interactive view with Cn3D
Bacteriophage lambda lysozyme and similar proteins
Lysozyme from bacteriophage lambda hydrolyzes the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. However, unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan, but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli, though they differ structurally.
Statistics
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PSSM-Id: 381598
Aligned: 75 rows
Threshold Bit Score: 137.292
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
sugar bindingcatalytic
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:sugar binding site [chemical binding site]
Evidence:
  • Structure:1D9U_A; Bacteriophage lambda lysozyme binds chitohexasacharide; contacts at 4A
  • Comment:N-acetylglucosamine units from two hexasaccharides bind to all six subsites of the bacteriophage lambda lysozyme

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                  ### 
1D9U_A       6 NQRKAFLDMLAWSEGTdngrqktrnhGYDVIVGG--------ELFTDYSDHPRKlvtln------pklkSTGAGRYQLLS 71   Bacteriophage la...
AAC45714    35 PQVRAFLDFIAASEGVk--------hGYQTAIGN--------YRITDFSRHPGNsvrrsftrtdgsrstSDASGRYQFMG 98   Neisseria gonorr...
CCM77130    15 PNVQRALASIRAAEGTary-----tdPYSVGFGG--------RQIGDLSQHPGTmsafsdl--sgnrkkTSAAGAYQFLD 79   Rhizobium sp. CC...
EKQ70418  4965 PNVRAVLDTIAYAEGLwgk----pggGYDLGFNY--------RKISNMSKHPFHgnert------pgggSSASGRYQAMG 5026 Oscillatoriales ...
AFZ11233    83 PEVRAFLDVISMAETGtid-----psSYSILVFN--------GSFSDFSTHPKVkqcsai---rgrricSTAAGRYQIMD 146  Crinalium epipsa...
AGA29258    17 KNVRAFLKVIRWAEFYphgn---lgsDYRRRYGG--------SELNDLKDHPMNqter-------wgkkSSASGAYMITK 78   Singulisphaera a...
ENU45347    14 PNARKMLDLIAATEGVk--------yGYNTLFGN--------QRIDDLSWHPNVkkpftqt--dgqvkyTTAAGRYQFLK 75   Acinetobacter ge...
ENV46056    14 PNVRKMLDLIAASEGSk--------yGYNTLFGN--------QQFSNLSAHPNIkkefkqt--dgttnyTTAAGRYQFLN 75   Acinetobacter br...
ENX08885    14 PNVRKMLDVIANAEGVk--------hGYNTIFGN--------ERSDDLKAHPNVkkeftqt--dgkknsTTAAGRYQFLK 75   Acinetobacter sp...
KFC76418    34 PNVAAFLKAIAAAEGG----------GYDFRYGAlkgrsddrWRFTDMSTHPGPgig----------gkSTAAGMYQITR 93   Massilia sp. LC238
Feature 1       #  ##                    #  #                     #  ###        #              
1D9U_A      72 RWWDAYRKQLglkdFSPKSQDAVALQQIKERg-ALPMIDrGDIRQAIDRCSN--IWASLpg--aGYGQFeh--kaDSLIA 144  Bacteriophage la...
AAC45714    99 YTWKGLAKQYgftdFSPATQDKAAVALILAKkgAMEAILnGDYEQAVMKLGG--IWASFptapnEYRQHkr---sWGFVH 173  Neisseria gonorr...
CCM77130    80 RTWGNLSGNLglrdFGPESQDIAAIGLLDQSg-ALDNVLaGDVNGFVNDANG--TWASLpg--sPYNQPtr--trAFINS 152  Rhizobium sp. CC...
EKQ70418  5027 HTWAEAARNYglkdFSPASQDVFAVAKLADRg-ILERIAaGKINDPFVRRQLgyEWASFeg--nPYGQGtsmgswSKAIP 5103 Oscillatoriales ...
AFZ11233   147 FNWDYLAPKLglpdFSPESQDRMALYFIERKg-AMADILaGRFEKAACKVGT--VWASIpppcnRYGQSrh--kmAQLRQ 221  Crinalium epipsa...
AGA29258    79 ETWVEYKKKLgltdFSADSQDRVAIAIIKQAk-AYDLIReGKIEDAVKKLNK--RWSSLp----DGSQHqa---gVTMEK 148  Singulisphaera a...
ENU45347    76 DTWDGVARQYglkdFSPQSQDLGALALLAQNg-ALPYVLkGDFNTAIKKSGS--TWASLpt--sPYAQNkr--swDFIDK 148  Acinetobacter ge...
ENV46056    76 STWNNIAKQYgfrdFSPKAQDLGAIALIAGRg-ALNDVMnGNYKSAIQKLGK--EWASLpt--sPYDQGkr--swDFVNS 148  Acinetobacter br...
ENX08885    76 GTWDKVSKKYgltdFSPKNQDLAAVALILGRg-ALGDVMkGDFTKAVGKLGN--EWASLps--sPYAQPkk--swRDIQN 148  Acinetobacter sp...
KFC76418    94 PTWQHHGAKLglrdFSPRTQDLIAVEILRSLg-IIDAIKqGAIAEVMPKVAR--IWAALp---kGPGQRnh--ypPQRYV 165  Massilia sp. LC238
Feature 1             
1D9U_A     145 KFKEAGG 151  Bacteriophage lambda
AAC45714   174 NFFRQRG 180  Neisseria gonorrhoeae
CCM77130   153 AWNNYTP 159  Rhizobium sp. CCGE 503
EKQ70418  5104 FFHKRVK 5110 Oscillatoriales cyanobacterium JSC-12
AFZ11233   222 MYDQRLR 228  Crinalium epipsammum
AGA29258   149 TLEQFRA 155  Singulisphaera acidiphila
ENU45347   149 QLGSTTI 155  Acinetobacter genomosp. 13TU
ENV46056   149 HLGQNVG 155  Acinetobacter brisouii
ENX08885   149 MVGEVKA 155  Acinetobacter sp. NIPH 2171
KFC76418   166 SFDRFLS 172  Massilia sp. LC238

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