Conserved Protein Domain Family
portal_lambda

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TIGR01539: portal_lambda 
phage portal protein, lambda family
This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 273679
Aligned: 4 rows
Threshold Bit Score: 620.743
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P36272        26 AGFGGQMAEWLP-PAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMflisYRPnwRWLGMREtaakSF 104 Enterobacteria ...
BAA89642      23 AGSGRRFFHFQP-ELGSINNLLSQSLETLRSRSRDMVRKNPYAANIIDTIVSNSIGTG----IKP--QSKARDG----EF 91  Wolbachia phage WO
WP_010893237  45 KAGQVDANDLWSsIPVSPDEYITQRLPILVARMREQWSNNDHVKRYIDLCRRNIVGPRgivmQAQ--SRKSRSGaldtTI 122 Xylella fastidiosa
WP_001009892  30 EAITPTRTHRVKrENRSGDQLIQLAGKSLREQARWFDNNHDLVIGALDKMEERIIGAKgi-iVEP--QPLTGTGtlnsVL 106 Salmonella ente...
P36272       105 VDEVEAAWSEYAEgmfgEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWd----TETTQLFRTRFKAVSPKRVDTPGH- 179 Enterobacteria ...
BAA89642      92 RKKVQELWLKWTD----EADSCGISDFYGLQALVCRSMIEGGECFVRLRTr---kLEDRFSVPLQLQVLESEHLDNKTNq 164 Wolbachia phage WO
WP_010893237 123 NDAIETWWQDWGRk--gHCDVTGKLSWREIQTLCVETCARDGECIARKIYg-----THAGPHGFCLQLIDPLRLPVRYQm 195 Xylella fastidiosa
WP_001009892 107 AEKIRRCWAEWSV----SPEVTGQYTRPVLERLMLRTWLRDGEVFTQVLTgkisgLSPVAGVPFWLEALEPDYIPLER-- 180 Salmonella ente...
P36272       180 ---GMGNRFLRAGVEVDRYGRAVAYHICEDdFPFSGSGRweriPRELPTGRPAMlHIFEPVEDGQTRGANQFYSVMERLK 256 Enterobacteria ...
BAA89642     165 --tLGNGNVIRNGIEFNRLGQREAYYLFRE-HPGEGSFG----ESVRVPANDVL-HIYKPLRPGQIRGEPWLSSILLKLY 236 Wolbachia phage WO
WP_010893237 196 lktDQTGGFVRQGIEFNRFGKPLAYHFSSIdERDTYYYSingrGYVRVPAEEVI-HIFKPVMVGQRRGLPWAATSLLRLH 274 Xylella fastidiosa
WP_001009892 181 ---TDNNSNLVQGIYFNEWRRPVKYLVCQS-WPGA---GaaavAVKEVTAENML-HLRFTRRLNQARGASLLAPVIIRLM 252 Salmonella ente...
P36272       257 MLDSLQATQLQSAIVKAMYAATIESELDtekAFEYIAGApqeQKdnplinilekfsswyDTNNVTLGGVKIPHLFPGDDL 336 Enterobacteria ...
BAA89642     237 ELDQYDDAELVRKKTAAMFAGFITRLDP---EANIMGEGeasEQ---------------GVALSGLEPGTMQLLDPGEDI 298 Wolbachia phage WO
WP_010893237 275 HLQGFEEAAVQNARAAASKMGFIKYQEGfgaRADEHEN----VA---------------QTIQMNAGPLSFHELPAGGDI 335 Xylella fastidiosa
WP_001009892 253 DLKEYEDSERIAARIAASLGMFIKKQDV---GTDGYVAP---EK---------------RKETQIQPGMLFDGLNPGEDI 311 Salmonella ente...
P36272       337 KLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRYFMGRRK-FIAARLATQMFSCWLEE 415 Enterobacteria ...
BAA89642     299 KFSEPSDVGGSYEAFIRQQLRAIAIGTGITYEQLTGDLTGVNYSSIRAGLIEFRRRCAMLQHnIMVFQFCRPVWSRWLEL 378 Wolbachia phage WO
WP_010893237 336 QDWNPQYPSGEFGLFTKAAKQSLAAGMDVSYHALSGDLADVNYSSIRQGTLDERERWKEDQQ-FFIESLHTPVFEAALKV 414 Xylella fastidiosa
WP_001009892 312 GMIKSDRPNAGLESFRMGQLRAVAAGLRGSFSSIARNYDGT-YSAQRQELVEAQEGYSILQD-SFIAAFTRPLYRRWLAA 389 Salmonella ente...
P36272       416 ALLRGIIRPPrarfdFYQARSAWSRAEWIGAGRMAIDGLKEVQESVMRIEAGLSTYEKGLALMGEDYQDIFRQQVRESAE 495 Enterobacteria ...
BAA89642     379 AVLCGELSID-----EKVVKAAKEEVKWIPQGFDWVDPLKDQQAQQMAVRNGFKSRSEVVSEMGYDVEEIDQEIAEDQKR 453 Wolbachia phage WO
WP_010893237 415 ALLSGQIRVHgk-plPAEHYDRYRRVSWQGRRWAWVDPRADVESALTCIRGGLTSTSQVILEQGRDPQDVFREIAQDLKE 493 Xylella fastidiosa
WP_001009892 390 AVASGAIEVP-----AGTDMSSLFNAVYSGPVMPWIDPLKEANAWRVLIRGGAATEGDWVRARGGAPADVKRRRKAETDE 464 Salmonella ente...
P36272       496 RQKAGLSRPVW 506 Enterobacteria phage P21
BAA89642     454 ANSLNLIFDSD 464 Wolbachia phage WO
WP_010893237 494 MQASGIPNDYL 504 Xylella fastidiosa
WP_001009892 465 NRKLGLVFDTD 475 Salmonella enterica
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