Conserved Protein Domain Family
selenium_YedF

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TIGR03527: selenium_YedF 
selenium metabolism protein YedF
Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Statistics
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PSSM-Id: 274630
Aligned: 19 rows
Threshold Bit Score: 224.426
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010938959   6 LNCQKLPCPQPVLRCKALLDTEAPA-RCTVTVDNAPASENVARFLTSRGYDTSVHADPEGLWNIIAVRKDSAVAPscdce 84  Desulfovibrio v...
WP_011418684   5 IDARGLACPQPVILTKKALEHCD---SLTVRVDNIAALENVKRMAKSQNCRVTVKQAQDGTWTLELTRESGAKEVeegse 81  Syntrophus acid...
WP_010943158   4 IDCRNMACPAPVVTTKRALEEAGGEtV-RVLVDAGAPRENVARFAANRGFRVAVEEADGGFA-ITIGSGEGAPSApae-- 79  Geobacter sulfu...
WP_011339976   6 IDCRGLSCPRPVVETKKAMEAF-PDaEIEVLLNDEIACENVSRLAAGRHWTVVAVTREGEDIQLLLRSENAEAGEpap-- 82  Pelobacter carb...
WP_002681889   4 VNAMGQACPIPVIMAKKAVRENTGKeNISVKVDNEVATQNLSKMAAQLGIGVEVNKISEKEFTVLLKAKDGVNLNpva-- 81  Treponema denti...
WP_011367871   6 LNCQNLPCPQPVLKCKDCIDTRSPA-QMAVIVDNAAAKENVTRFLGTRGYAVTATETPQGAWKLQAVLESSVGAQsgceq 84  Desulfovibrio a...
WP_011138897   2 IDVRNLGCPEPVIRTKKALDALGTEgILEVLGNTEASKENILRFAQNSGYGASLEERAGGEFLITLTKGYECTLAspk-- 79  Wolinella succi...
WP_011188211  24 IDACGLPCPGPVLLAKDAIEQPGND-QLTILLDNQASEENVSRFLQSQGFQVETGKRGEIFEVRATRSGEFVASSltap- 101 Desulfotalea ps...
WP_012546665   3 IDARGLECPKPIILAENALSKI-EEgVLTIIVDNEGSLENLKKYATRFGYYYEV-EKNENYWKLKIVKGYTCQLNnis-- 78  Thermodesulfovi...
WP_005874004   4 VDTRGKLCPLPLILLKKAVDGTPVGeEISVMTDNETAKCNLRDYIGELG-AVAIESEEGDYTTLTFRVSTHIEEAaptsc 82  Porphyromonas g...
WP_010938959  85 vmdar--giaaiagtaE-MPQKVTVFITSETLGSGDDVLGGKLMANFLATLPELGDELWRIVCVNGGVRLAT--REHPAV 159 Desulfovibrio v...
WP_011418684  82 lqdivcdvagkeesepS-LSGPSVIVISSDCMGQGDDELGRLLMRGFFHTLPQLDRRPDMIIFYNTGVKLTV--KGSEVL 158 Syntrophus acid...
WP_010943158  80 --------------npA-RQGRTVMLITSDRLGDGPEDLGRLLMKSFIITLLDQESLPDRMMFLNSGVLLTT--EGSEVL 142 Geobacter sulfu...
WP_011339976  83 -------------ealS-DEEAFLVYCPSDKLGRGDDKLGEILMQSFIKSLVDMPPLPKRIVFLNSGVRLAT--EGSAVL 146 Pelobacter carb...
WP_002681889  82 --------------vpQtSSGEYAVVINSDQMGSGDEGFGKKLLEGFIYALTEQDVLPKFVVCYNSGVKLTT--ENEKTV 145 Treponema denti...
WP_011367871  85 cev------lsseelrA-LDEKTVVLITTEVLGSGDDTLGTRLMKNFLATLPELGSTLWRVVLLNGGVKLAS--DGHEAL 155 Desulfovibrio a...
WP_011138897  80 --------------psR-ESGEKVMFVKDDCIGERSE-LGEKLARGFLKALLEANTLPKKIIFVNRGVWLTTkeENRATI 143 Wolinella succi...
WP_011188211 102 ------------dkqeA-GEQKIVVMITSEYLGAGDKLLGEKLMISFIKTLKEMGPDLWQLIFVNGGVKLTL--ASSPVL 166 Desulfotalea ps...
WP_012546665  79 --------------ekA-IKKNLLVIISSDVIGK-DENLGRILMKAFFDTMIVTGQLPQMIFLMNTAVKLST--IDEEFI 140 Thermodesulfovi...
WP_005874004  83 p---------aehphtV-AQGDYLIVAKSNRMSTGNDELGSILMRAFVNAIGELDRLPSHIILYNTGVLLAV--EGTDTA 150 Porphyromonas g...
WP_010938959 160 THLNKLEAM-GVDILVCGTCLDHFGLLSEKAVGQTTNMLDVVTSLQLATKVIRP 212 Desulfovibrio vulgaris
WP_011418684 159 EDIGQLEQA-GVEILVCGTCLNFFNLTDQLSAGKISNMYDIADALTTAGRLARP 211 Syntrophus aciditrophicus
WP_010943158 143 QALEQLGNR-GVEVLSCGVCLDFFHCKEKLAAGTVTNMFTTAEALLTAGSVIRL 195 Geobacter sulfurreducens
WP_011339976 147 DTLRYFEEQ-GVEIFSCGTCLDFFGLKEQLRVGNATNMFEIITALRSFDRVVQP 199 Pelobacter carbinolicus
WP_002681889 146 NDLKALASQ-GCEVLSCGLCLDFYGLKEKLKVGTPTNMYRITEIMRT-HFVVRP 197 Treponema denticola
WP_011367871 156 PELQKLESA-GVDILVCGTCLDFFGLLERKAAGQTTNMLDVVTSLQLATKVIRP 208 Desulfovibrio alaskensis
WP_011138897 144 DDLILLEKK-GVEIYSCGACLDYFGLAQELKVGKIGNALETINTLLDSSGVISL 196 Wolinella succinogenes
WP_011188211 167 RELQEYERA-GTIVLACGTCLEHFGLMPEKEVGSATNMLDIVSATQLADKVITI 219 Desulfotalea psychrophila
WP_012546665 141 SILKKVEQM-GTEIFTCGTCLKYYNLEDSLKVGYRGTTNHFVEGMFDFHKTVWI 193 Thermodesulfovibrio yellowstonii
WP_005874004 151 ETLAELNKKhGIPIIVCGTCADYYEVKDKLRIGTISNMYRIMQLQVATRHIIYP 204 Porphyromonas gingivalis
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