1IHF,1OUZ,2NP2,2NP2


Conserved Protein Domain Family
IHF_B

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cd13836: IHF_B 
Click on image for an interactive view with Cn3D
Beta subunit of integration host factor (IHFB)
This subfamily consists of the beta subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.
Statistics
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PSSM-Id: 259858
Aligned: 154 rows
Threshold Bit Score: 79.0382
Created: 8-Feb-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfaceDNA binding
Conserved site includes 33 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1IHF; Escherichia coli IHF heterodimer (IHF beta subunit binds the IHF alpha subunit); contacts at 4.0A
  • Citation:PMID 8980235
  • Structure:2NP2: Borrelia burgdorferi Hbb homodimer; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #  ##  #    #   #  ### ##########   ###### #                          ## # 
1IHF_B         1 MTKSELIERLATQqs-hIPAKTVEDAVKEMLEHMASTLaQGERIEIRGFGSFSLHYRApRTGRNPKTGDkVELEGKYVPH 79  Escherichia coli
YP_001957329   1 MNKAEVVTEIATKt--gINKSDVQVVVESFFQVVQQAMvDGKSVHFKGFGKFFNKKRSkKIARNLTDNTaMVIDEHYVPT 78  Candidatus Amoe...
CCH02055       1 MTKAEAAAEVAAKmgldITEKQAAQMIDTFGQVVKQAVaDGQSVYVRGFGTFHPKPVAeKVARNISKGTsIVLPAHTKPA 80  Fibrella aestua...
YP_006411637   1 MTKKELVDLIADKr--dLSAQMVLTVVEDFMKIIQSSVaDGQRIFLRGFGVFQPKERKaKVGRNITRGEqLSIPPKRVPQ 78  Alistipes fineg...
EIY37826       1 MRKEELIKQVAESt--gIAICEVRTVIEAALKETVDAVaNGKTLYIRGFGTLSPKHYKrKVARNIHKNEtIVIAEHYTPH 78  Bacteroides dor...
CBK62885       1 MTKQDLITVVGSKt--gQNDSHVRPIIEATLDAIKECVqRKEPVYLRGFGTFQPKKRAeKKARNITAGTtIIVPAHEVAH 78  Alistipes shahi...
YP_006874642   1 MNKAELIREISNKt--sISFEETTLIIDSLFEVIKEEVhKQKKITFKGFGAFFQKKRAtKKVQLIKEKKtITLAEHYIPA 78  Emticicia oligo...
YP_003248754   4 ITKQSLIQEIAKSt--gFVRNDIKIVVEQFLDLLGEKLiEGNTIEIRGFGTFACKPRKaRPARNPRTGEtVLIDERLVPT 81  Fibrobacter suc...
EHQ26576       1 MTKADVIAGITAKt--gKGKEATETIIDAFFEVVQSSLtNGEDVFVRGFGTFLVKKRAaKIGRNITKNTaVQIPESYIPA 78  Mucilaginibacte...
EFR53699       1 MTKQELINTIAERa--eINKIDVEHAINTAFDVAKETIaNGDSIFIRGFGTLSPKRRQaKVARNITAGTsVVVPETIVPH 78  Bacteroides fra...
Feature 1        # #   #   
1IHF_B        80 FKPGKELRDR 89  Escherichia coli
YP_001957329  79 LKISKDFVNK 88  Candidatus Amoebophilus asiaticus 5a2
CCH02055      81 FKPAKEFVKT 90  Fibrella aestuarina BUZ 2
YP_006411637  79 FRPYPHFKKV 88  Alistipes finegoldii DSM 17242
EIY37826      79 FKPAKSFKNK 88  Bacteroides dorei CL03T12C01
CBK62885      79 FKPSKSFTIN 88  Alistipes shahii WAL 8301
YP_006874642  79 FSASKTLKVT 88  Emticicia oligotrophica DSM 17448
YP_003248754  82 FKFSNDIKDK 91  Fibrobacter succinogenes subsp. succinogenes S85
EHQ26576      79 FRPGDEFKNK 88  Mucilaginibacter paludis DSM 18603
EFR53699      79 FKPCKAFKGQ 88  Bacteroides fragilis 3_1_12

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