Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd06338: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380561
Aligned: 160 rows
Threshold Bit Score: 252.119
Created: 30-Jan-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
CEP69225   64 KIGASLSFTGqlsrEGNLTKKGYDLWVktvnnag--ginvngeKYKVEIVYKDDqseaQRSAKLTEQLITEeGVNFLLGP 141 Moorella glycerini
SHO67667   35 VIGASLPLSGplagFGNFQKWGYQTAVdevnkag--gitidgkKAIVKLVVRDDksdpNAAASNTESLISRdHSVAVLGS 112 Pseudoxanthobacter...
SNT05173   40 VIGASLPLSGslagFGSYQKWGYQTAVdevnaag--gllingvKTPVKLVVRDDktdpVTTSRNTQTLITRdQAVAMLGS 117 Pseudomonas japonica
ODU65417   28 RIGATIPLSGvlagFGSFLKWGYQHAVdevnaag--gievdgaKRQVELTLVDDksdpNEVTSQTKTLISSnNVDALLGS 105 Leifsonia sp. SCN ...
BAV46951   34 VIGAPISLTGplagDGKEQKWAYEQAVadintaggimvksagkKLPVRLVVADDesseGKVASALENLIKVqKVDALLST 113 Mesorhizobium loti
OWW22835   39 VIGASLPLSGplagFGMYQKWGYETAVndvnkag--gimvdgaKTRVRLVIRDDktdsNVTASNTETLISReKVVAMLGS 116 Noviherbaspirillum...
OJX07872   24 LIGAPISMTGllapDGLDQKWAYEQAVadanarggifvkeagkKLPVKLVVADDqsdpAKVTDAMERLIKIeKANLILST 103 Burkholderiales ba...
OGP69225   36 RVGAINSITGmnamTGAECKWAYETAVadinkkggvfvkslnkKLPIKLIFADDkstaDQAAAAMERLIKMdKIDLAIST 115 Deltaproteobacteri...
OGO43941   38 LFGAVNSLTGanvqTGADQKWTFEKAVadinakggifvkdlnaKLPVKLIFEDDqstpDGAAAAMEKLIKVhKVDLVLSS 117 Chloroflexi bacter...
OFW61533   68 VIGAINSMTGsnvlTGQEEKWAQEKAVadinaagg-vmladgkAHNLVLKYVDDkssdTEAAAAMEKLIKSdGLKIVLSS 146 Actinobacteria bac...
Feature 1     ###                     ###                                                     
CEP69225  142 YSSgisaat-aaiaekYNKLTIVPLANapsly---------ehgykNLFGVLPLATTYLNGVLDLAKtldp---nlkKVA 208 Moorella glycerini
SHO67667  113 CTPalvnag-alvaerAKVPMVTGCDPlgafts--------vkkwkYVWDLFFAEQDTAQATIQTILgydl--ntnkKIA 181 Pseudoxanthobacter...
SNT05173  118 CTPalvnag-aliaerNRVPLVAGCNPlgafra--------vrqwqYAWSVFFDEKDVAEAPFLLLKelnv--atnkKIA 186 Pseudomonas japonica
ODU65417  106 CTPdlvnpg-avvadsQGVPFVTGCNPievfks--------vkewtYAWDIFFSVPELAGSTFEALKanei--etnkQVF 174 Leifsonia sp. SCN ...
BAV46951  114 HSGpmniagaivaekyKKFYMITTAFPfewqp----------lklkYSALFFFHPGPGAEVPFEIWDklpan-ekpkNPA 182 Mesorhizobium loti
OWW22835  117 CTPalvnag-aliaerRKVPLVAGCDPlqafrs--------vrkwnYAWVLFFDENDLATAPFRMLAemnl--etnkKVA 185 Noviherbaspirillum...
OJX07872  104 HGGdlnmagalaaekyKKFYMITTMWPhmwsp----------kkfkHSALMFYDAGGGAEVPFKIWQslpes-erpkHPA 172 Burkholderiales ba...
OGP69225  116 NITplniaa-gtvcekYKVYFQITCSWldfie---------kenfkWVSDLFTSAAEAARTPYLIWEeqlpkdqrpkKPA 185 Deltaproteobacteri...
OGO43941  118 NNDklnnaa-atvadkYKMYYAGGGGWwgddfl--------aqgfqYSSDMFFTAAGAAEVPFQVWDlqpvd-qrpkRVA 187 Chloroflexi bacter...
OFW61533  147 NTTpynqaaatvaeqyQAYYHIVSSWTdeaspdgsfpgfiggmdlkWSTDMFESAGDSGLVAVGGAKamdpa-dqpkNFA 225 Actinobacteria bac...
Feature 1            #                                                    #                   
CEP69225  209 IISPDAlFSLSVAEGAKKYAea-ngFQVVYYDKYpadtkdLSSMITNIKGAgaqIFLGTGYladGVLAVRNAKDLgykPA 287 Moorella glycerini
SHO67667  182 ILHDNGpDGQVVGGVIWPKAaaeagFEIVQQASFpvdntqFTSIVAEAKAKgadIVVVDAItpqAVSIRKQMASAgykPK 261 Pseudoxanthobacter...
SNT05173  187 ILHDNGpDGSVIGGKLWPSLaerdgYEVVSRASFpidntqFNSMIMEAQSKgaeIVLVDAItpqAVAIRKQMEAAgfrPK 266 Pseudomonas japonica
ODU65417  175 ILHDNGpDGKAIGGEIWPAMaesngYTVVGNIEFpadnsdFSAAIQKAKESgadVVLIDSItpaAISIRKQMAAIgwtPK 254 Leifsonia sp. SCN ...
BAV46951  183 LVSEDSpDGKGFGGAFEAAAkk-ygYTFAVDDPWaigatdYSALITKLKAAnvdAMLVFGSpadTVTLLRQMKELgfsVP 261 Mesorhizobium loti
OWW22835  186 ILHDNGpDGQVVGGQIWPASakaggYEVVAANSFptdaqqFTSMIAQAKASnadVVLVDAIppqGVAIRKQMASAgfnPK 265 Noviherbaspirillum...
OJX07872  173 LVMEDSpDGQGFAGAFRNFAkk-ygYTFAMDEPWamgakdYSSYILKMKAKgvdAILLFGNptdAITLVRQMKEQnfsVK 251 Burkholderiales ba...
OGP69225  186 LMMEDNqDGQGFGMGFKAFAke-ygYTFAVDDPYapgskdFSSHILKWKAAkvdALLWLGSptdGITLLRQMKEQglkIP 264 Deltaproteobacteri...
OGO43941  188 IMVMNIpDGAIFGEGVQAAAkk-hgYEVVDLDAYtlgskdFSSSILKMKSSnadSLLWLGTppdSITLIRQMKAQnfnLK 266 Chloroflexi bacter...
OFW61533  226 VMTENNpDGIGFGDATKGGLea-qgWNVVSYEKFvegnkdFSSIILKFKQSnvdAVVTLIApsdGITFVKQMKEQnwsPK 304 Actinobacteria bac...
Feature 1         #                                                                           
CEP69225  288 IMAFTiatsip-dfrkslGADAEGVMGGEWWTPnmkwkgdifgsAEDYAKLFKAEygeepayYSAAASVSGIILQKAIEK 366 Moorella glycerini
SHO67667  262 VLVIEkgaepl-qfaealGALSDGVLVGGYWDPsfp-----ypgAKDLATRFEAEtkltssqHIADSYTAAQVLLDAIAA 335 Pseudoxanthobacter...
SNT05173  267 VLVMEkgaepe-qfalalGKLSDGVLVGSYWDPsfp-----fpqARELATRFEQEtkssfsqHIADSYATAQILLDAISA 340 Pseudomonas japonica
ODU65417  255 VIVAEkggepi-qfaealGDLANGILVGAYWDPsfd-----ypgAADLKTAFESEtgltssqHIADSYTAAMVLMDAIAA 328 Leifsonia sp. SCN ...
BAV46951  262 YLHGWkgtwtg-efhealGADSDYILTDGFWSSsyp-----yhgAKELGDRYEAEfkk-dsvTVGAFYANAQVLAQAIEK 334 Mesorhizobium loti
OWW22835  266 LLVVEkgaepe-yfaqatGKLADGVLVGGYWDPsfp-----ypgAADLAKRFEAEtkqtqsqHIADAHAAAQVLLDAIAA 339 Noviherbaspirillum...
OJX07872  252 YLHGWkgtwtg-efrealGDDSDYVVADGFWSMdfp-----yagAKELGERYMKQfkk-gsvVVGMFYANAQVMLKAIEN 324 Burkholderiales ba...
OGP69225  265 YIHGWkgfwpteflegmgKEGVNYIIHDGFWTEkspap-gakelQQRFVKKFKKDs-----vSIGLYYANPQILAMAIEK 338 Deltaproteobacteri...
OGO43941  267 YTHGWmgfwpt-eyaealGADADFTVHDGFWAAslg-----ypgSEALDKAYRDShngqdsvSIGMYYAIVQVLAQAIEN 340 Chloroflexi bacter...
OFW61533  305 YIFGYkgfwpv-dfysglGADADYICYDGFWSEtlp-----ypyAKELGAAFTADhpgatsnSIGLYYAGVQILAEAIQR 378 Actinobacteria bac...
Feature 1                                                     
CEP69225  367 AGsldadavr-namrsldIQTFWGPIRFDErGVNVGtsSAAVSQIQNG 413 Moorella glycerini
SHO67667  336 AGtldrpkin-eaiaktdKIYVVGPVKFDA-AHTARl-PLVELQWQSG 380 Pseudoxanthobacter soli DSM 19599
SNT05173  341 ANstdsaain-aaiaktdKEYVIGPVKFAA-DHTSPi-VMSVVQWQDG 385 Pseudomonas japonica
ODU65417  329 AGtldkdavn-eaigktdKTYAVGAIKFDA-EHAAKi-PVVSSQWQDG 373 Leifsonia sp. SCN 70-46
BAV46951  335 AGstdagaihdaifgqefKDTVVGDLKFDQtGFALI--PSVATQWWQG 380 Mesorhizobium loti
OWW22835  340 AGstdrekin-aaiaktdKTYVVGPVKFDA-DHTSRi-PITVMQWQGG 384 Noviherbaspirillum denitrificans
OJX07872  325 TGsldpkvvreaivghefKDTVEGDVKFDKsGLALV--TSTANQWWKG 370 Burkholderiales bacterium 70-64
OGP69225  339 AGsyksekvrdaifggefKGTMMGDVKYNEkGLCFK--PLIAMQWWNG 384 Deltaproteobacteria bacterium RBG_13_53_10
OGO43941  341 AGtldstavrdatwnhtfKGTTMGDVTYNDkGFAET--PSLALQWMEG 386 Chloroflexi bacterium RBG_16_60_22
OFW61533  379 AGvfepgpvrdqvfngsfPGTVMGDIKYNDqGIADI--PFLAFQWAAG 424 Actinobacteria bacterium RBG_16_64_13

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