Conserved Protein Domain Family
YkuD_2

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pfam13645: YkuD_2 
L,D-transpeptidase catalytic domain
This family is related to pfam03734.
Statistics
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PSSM-Id: 463944
Aligned: 73 rows
Threshold Bit Score: 167.298
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Cpha266_0681  31 EKISVDAYK--SAFVALDAYRTTHPEENPryLAVVDFTKPSFIKRLALIDLKTGEEFFYR-VAHGKN---SGEL---FAS 101
WP_014243796      38 SGIDFDAFS--KGITGYYSLAAQGKTSDSpiFSIIDFNEPSNRHRWYFFDLSQGRFLYNVpVSHGAR---TGEL---MSQ 109 Halobacteri...
WP_013685654      43 tRLELTLLQqlKSLKTYIKSKNGAYSNQK--AILIDMKIPSKYFRLFVVDLKTDKILSKGlCSHGSGseiAGT----DSL 116 Fluviicola ...
CCB69766          23 PEKNYKKFH--LEAQNYCKSHEMNTEY----YFLLDLSLHPGRNRFFVINIKEQKIIDRNlVTHGSCdvfSDNPnkwEKS 96 
jgi:Swit_4407     31 PMIDPRLVG--RALAALFHHHRSIWSRDM--IAIADFGLPSSVPRLFLVDILRGTT-TALlVAHGKG---SDPDhsgMLQ 102
jgi:Swit_1362     40 PRLRPEVRS--RALAAMSRHIDRIKVRDL--IGICDFDDPSSAPRFHLLDVASGRI-DSLlVAHGRG---SDPShtgWLQ 111
Q6MN59           100 RMINSKALA--EAVLYFDKNQSRIKNKKY--MSLIDFGKRSTQARFFIINMSTGEV-TAIhTAHGKG---SDANhdgYAE 171 Bdellovibri...
OUHSC:BDW_09390   86 RVVPTKALE--TAVLYFDQNKSKLKNQKY--ISILDFGKRSSVKRFHIVDMKTGKV-WSLhVSHGKG---SDKNhdgYAE 157
Q6MPR3            90 HIVPTKALE--TAVLYFHENKAKFKNQAV--MSILDFSQKSTQKRWYFIDMKTGAV-WNVhVSHGKG---SDSNhdgFAE 161 Bdellovibri...
OUHSC:BDW_01475   84 QLVPTAALE--DAVIYFHKNKASFKNQNV--LSIIDYRKRSSEKRWFFIDLKTGAV-NSLhVSHGKG---SDSNhdgYAE 155
jgi:Cpha266_0681 102 WFSDTSESNMSSLGLYKVLET-YSGDHGKAMR--LEGLEPSVNSNAFSRDIVLHSAEYVSLRYIfINLltlngPRIGRSN 178
WP_014243796     110 YFSNTNGTKKSSLGFYKTGTRkNWSKFSKAMF--LYGLDPGENDNAYERLIIFHNSAYVRFNLP-EGT------RNGRSH 180 Halobacteri...
WP_013685654     117 QFSNTPNSYMTSLGMYKVGSA-YQGSFGKSYR--LIGLEKS-NDKAIARAIVLHRYSCVPDEEQf--------YPICNSL 184 Fluviicola ...
CCB69766          97 KFDNRLDSHCSMKGKYKIGKR-DWSAWGIKVKywLEGLEES-NQNAVKRVVVLHSWEAVSNTEIyPEV-----SPL--SW 167
jgi:Swit_4407    103 SFSDIVGSAATSEGAYLTGDA-YGGAHGPSRR--LIGLDPG-NAHAEERAIVIHSAWYANPDMV-AKQ-----GKLGRSD 172
jgi:Swit_1362    112 KFSNAPGSAASSSGAFVTAEE-YYGNHGRSRR--IDGLDPT-NSNARARAVVVHGAWYAERQMI-AQH-----GKLGRSE 181
Q6MN59           172 KFSNNSGSNASSLGYYLAAET-YYGKHGLSLK--LDGLSST-NSKARARAVVIHGASYVKESSV-IQ---------GRSW 237 Bdellovibri...
OUHSC:BDW_09390  158 SFSNRSGSHASSIGYYITGST-YNGSNGLSLR--LDGKSST-NSAARGRAIVIHGASYVKDSNR-IQ---------GRSW 223
Q6MPR3           162 KFSNVEGSNASSLGFYKTAET-YQGSNGYSLR--LDGLSTT-NSNARSRAIVVHGANYVQDSNV-IQ---------GRSW 227 Bdellovibri...
OUHSC:BDW_01475  156 KFSNVSGSNATSLGFYKTAET-YSGSNGYSLR--LDGLSST-NSQARSRAIVVHGASYVQDQNI-VQ---------GRSW 221
jgi:Cpha266_0681 179 GCFVVSP-HAIDEVVQKLNHGAFLYA 203
WP_014243796     181 GCFAVPNgTLPEKLLKLMADGSPTII 206 Halobacteriovorax marinus
WP_013685654     185 GCAMLSE-NYFEELIPLIDSESkpmi 209 Fluviicola taffensis
CCB69766         168 GCPAVSD-VFMQKLDAKLKASkkpvl 192
jgi:Swit_4407    173 GCFAVGE-ADIATVLARLGKGRLLYA 197
jgi:Swit_1362    182 GCFAFGE-SDLAQVMARLGPGRLIYA 206
Q6MN59           238 GCPAVAN-HLRDKVIGMLKGGSLIYA 262 Bdellovibrio bacteriovorus
OUHSC:BDW_09390  224 GCPAFSK-ANYKEVISKLKGGSLIYA 248
Q6MPR3           228 GCPAVSQ-ANRDKVINLIKGGSLLYA 252 Bdellovibrio bacteriovorus
OUHSC:BDW_01475  222 GCPAVSQ-ANHRSVIDRIKGGSLIYA 246
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