Conserved Protein Domain Family
DUF3876

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pfam12992: DUF3876 
Domain of unknown function, B. Theta Gene description (DUF3876)
Based on Bacteroides thetaiotaomicron gene BT_0092, a conserved protein found in a conjugate transposon. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or other bacterial species vs when in culture.
Statistics
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PSSM-Id: 432926
Aligned: 8 rows
Threshold Bit Score: 127.136
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8A5A2           4 TNEDYPSFNLFSIVGTWESVNLNPTVIIYRNGKEYLLSIVYVSeTTKQASPATYEIQQDGSQYFIATASkRLSVDYDPAK 83  Bacteroides t...
Q5LDJ9           8 NTEINQSFKLSAIVGIWESLNLHPAVMIYQSKKKYFLSMLHVS-DNGQAKPAVYEIQKEDNRYFIVSAFkRLYIGYDAVK 86  Bacteroides f...
WP_004291516    25 SC-DVADNRRDMLCGNWESVEGKPDVLIYKEGEAYKVTVFRRSgLRRKLKPETYLLQEENGNLFMNTGF-RIDVSYNEAT 102 eubacteria
jgi:Bacsa_3141  23 SCSESRFKDCDRLCGSWSSVEGKPDVLIYKEGDAYKVTVFARSgKTRKLKPETYLLVEENGNLFINTGY-RIDIAYNEAA 101
wustl:BV0648    27 SCSESGIDR-DKICGTWTSVEGRPDVLVYKEGECYKVTVFSRSgRTRRLKPQTYLLVEENGNLFVNTGY-RVDVSYNEAA 104
Q5LBJ1          23 GCRPVRIQMPDGMYGRWKSSAGRPDITLGTDSIGSFAIVHHRI-YDGKICPVRYPLHLNSPTKGYIRAEgCILFYYDSLK 101 Bacteroides f...
Q5LEI4          22 SCKETNAERLEKMCGEWVSTGGKPPFTLWEEDGRYRVTVMHRN-HTGGSEAETYLVRETEGVLFIETGF-AVMMDYDREK 99  Bacteroides f...
WP_011107103    21 SCKETNADRLRAMRGDWESVKNRPAFTLFEENGHYRVTTYRKT-YRGTIQTETYQISEQDGNLFIETGL-SVLLTYDKEN 98  Bacteroidales
Q8A5A2          84 DVLSISSLGDYLR 96  Bacteroides thetaiotaomicron
Q5LDJ9          87 DSISIFYYGEYLR 99  Bacteroides fragilis NCTC 9343
WP_004291516   103 DVLTFSPNGDYVR 115 eubacteria
jgi:Bacsa_3141 102 DVLTFSPNGDYVR 114
wustl:BV0648   105 DVLTFSPGGDYVR 117
Q5LBJ1         102 CVLYFSPGGDYTQ 114 Bacteroides fragilis NCTC 9343
Q5LEI4         100 DRIRLSPGGEYRR 112 Bacteroides fragilis NCTC 9343
WP_011107103    99 DRILLSPGGEYKR 111 Bacteroidales
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