6PC0,6PC3,2FLO,3CER,3MDQ,6PC1,6PC2,2J4R


Conserved Protein Domain Family
ASKHA_NBD_PPX_GppA

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cd24006: ASKHA_NBD_PPX_GppA 
nucleotide-binding domain (NBD) of the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GppA) domain family
Members of the PPX/GppA family are involved in bacterial survival and metabolism. They may play distinct biochemical roles involved in polyphosphate and (p)ppGpp metabolic pathways. Guanosine pentaphosphate (pppGpp) phosphohydrolase (GppA; EC 3.6.1.40) plays a key role in (p)ppGpp homeostasis. It specifically catalyzes the conversion of pppGpp to ppGpp (guanosine tetraphosphate). Sharing a similar domain structure, GppA is indistinguishable from exopolyphosphatase (PPX; EC 3.6.1.11), which mediates the metabolism of cellular inorganic polyphosphate. Especially, it is responsible for the maintenance of appropriate levels of cellular inorganic polyphosphate (PolyP). Some bacteria, such as Escherichia coli, possesses two homologs, EcGppA and EcPPX. Some others, such as Helicobacter pylori and Aquifex aeolicus, encode only one PPX/GppA homolog, which may play important roles in the homeostasis of both (p)ppGpp and PolyP. The PPX/GppA family belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily of phosphotransferases, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.
Statistics
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PSSM-Id: 466856
Aligned: 180 rows
Threshold Bit Score: 189.667
Created: 2-Aug-2022
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic siteactive sitenucleotide
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic site [active site]
Evidence:
  • Comment:The four catalytic residues are conserved among PPX/GppA homologs.
  • Comment:The PPX/GPPA enzymes use metal ions for catalysis.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                                                                            
6PC0_A     17 TVIDIGSnSVRLAVFKKtsqf-gfylLFETKSKVRIsegcyafnGILQEIPMQRAVKALSEFKEIALkyk--skKILCVA 93  Helicobacter pylor...
6PC1_A     17 TVIDIGSnSVRLAVFKKtsqf-gfylLFETKSKVRIsegcyafnGILQEIPMQRAVKALSEFKEIALkyk--skKILCVA 93  Helicobacter pylor...
OGV18428    9 AVIDVGAhFARLEIVQAsskgkkyetLEKLSNVAPLgidv-ftrGKISTQNTFLIGKILKDYSAVIKeyd--vkYIKAVA 85  Lentisphaerae bact...
OGV53303   13 SVIDLGShSVRMEIVQIsadg-kcevLENVSNPIPIgrdv-ftkGKISPDSVRLVGKILNDYRKIMKdyg--aeDCRAVA 88  Lentisphaerae bact...
OGW72296   11 AVIDIGTsAIRMVVAEVgskn-eirhLENLQKPVRFgrev-fttGRLSPAAIREAIGILQNFKTVLTayq--vkKVQAVA 86  Omnitrophica bacte...
OHD53851   10 AVIDIGShSIRMTIGEIvrkg-cfktIEHLWVPVLIgkdt-fskGVVSSQTVRDLINVIKQYLEVMKsyq--ieDYKAIA 85  Spirochaetes bacte...
OIO95075   16 AVIDIGAsALRAEIAEInedg-tirqLESLRKGVLLgndt-ftrGELSLESVRAACEVLRGFKKVMDeyg--vrDIRAVA 91  Armatimonadetes ba...
PYQ06042   28 AVIDMGAsAIRLLVAEAapgq-pvriLEEASRGVLLgkdt-fthGRLGAATVEATLKALEGFRRIMDgyg--vvRYRAVA 103 Acidobacteria bact...
RMF88737   22 AAIDIGSnAIRMMIAQVvaqg-qldvLERVHRPVRMgrdt-frtGRIGARSMRAAVEILRDYQQMMNvyg--vqRVRAVA 97  Planctomycetota ba...
TFG58849   11 AVIDIGStAIRMMVAEIrpdn-swrvLDRIWKTLSLgrdv-fvsSTISRDSLVQSLQILKGLREVLAgykvdeqDIRIIA 88  Spirochaetales bac...
Feature 1                                     #                           #      #            
6PC0_A     94 TSAVRDApNRLEFVARVKkacGLQIKIIDGQKEALYGGIACANLlh-------knSGITIDIGGGSTECALiekgkIKDL 166 Helicobacter pylor...
6PC1_A     94 TSAVRDApNRLEFVARVKkacGLQIKIIDGQKEALYGGIACANLlh-------knSGITIDIGGGSTACALiekgkIKDL 166 Helicobacter pylor...
OGV18428   86 TSAVREAsNSDIFIERVEklsGIRLQELDSTLESRLLFMAIKNSfmqsp-lftekNALICSVGTGATLVSFvekgiLKSS 164 Lentisphaerae bact...
OGV53303   89 TSAVREAtNRDLFIERIEhicGIRLDILEASEEVRLTYLSVKDTlekky-plskqDAVICMIGTGSTHMILvqngrVRSS 167 Lentisphaerae bact...
OGW72296   87 TSAVREAtNRDNFVDQVFvrtGIDIEVIEGPEENRLELMAVEQAlegrm-dlekkNCLIVEVGSGSTEVIIlnqgnVEIT 165 Omnitrophica bacte...
OHD53851   86 TSSLRGAsNADAVMERVFnatGIRIEIIEPLQEIQYYYHSARKLlkdry-gflqgNSLILSIGGGSTQIMLlvkgkIAFT 164 Spirochaetes bacte...
OIO95075   92 TSAVREAaNSDTFLDRVFmttGIEVEIIEGPEESRLSYAAIHEAlngrv-pfdkgVALLVEVGGGSADVAIlddgeIVHS 170 Armatimonadetes ba...
PYQ06042  104 TSAVREAqNSDAFLDRVRlrtGIDVEVIDGSEENRLTYMAVRETlrdhp-altsgDTLLLEVGGGSADISFlrkgqPINS 182 Acidobacteria bact...
RMF88737   98 TSALREAsNADNVLDRIFlacRFNVEVISIAEESRLTVDAVLHSigeie-giatgKTLIVDVGGGSTLLTVledgqIANS 176 Planctomycetota ba...
TFG58849   89 TSAVREAnNRDTFLDRVTistGFRVSIIDGIEENRLTYMAVQHAvkdmeavlsrsNSLIIEVGGGSTELMLlhrgkMVAA 168 Spirochaetales bac...
Feature 1                                                                                     
6PC0_A    167 ISLDVGtIRIKEMFldkd--------ldvKLAKAFIQKEVsklp----fkhkNAFGVGGTIRALSKVLmkrfdypidslh 234 Helicobacter pylor...
6PC1_A    167 ISLDVGtIRIKEMFldkd--------ldvKLAKAFIQKEVsklp----fkhkNAFGVGGTIRALSKVLmkrfdypidslh 234 Helicobacter pylor...
OGV18428  165 ENTRLGsLRLLEELerplanihlkevikpFVESSAKDMLAhstvn---fkngIMIGVGSSVRALLRLSdkmqlden---g 238 Lentisphaerae bact...
OGV53303  168 ETFRIGtLRLYEEIgqpasgk-kvkdiidTFVGCVVDDVTknypkgqkpplfIAVGAPVRALMNTFSGdkeepk------ 240 Lentisphaerae bact...
OGW72296  166 RTLSLGsIRLPEQAvagktdsavmqkvlkRSIHDIVLYAAreynf---eqvdTFIAIGGDMRFAAAQLqekseep----- 237 Omnitrophica bacte...
OHD53851  165 QSYNQGtLRLLRSYdlperf---feyalsPITINFINNMKnypeiq-gidciVALNDDLIRLLGSIGEdkeved------ 234 Spirochaetes bacte...
OIO95075  171 ATLAMGaIRLRQTVagistdhaqrtelykRFIHNAVANLQrdvslr-eadhfIAQGGDMRLVARRLKKavfhdt------ 243 Armatimonadetes ba...
PYQ06042  183 GTYPLGsIRMRQSLaswhgsqeqgmrllrRHIHNVVDDIRreiplr-eaqhvIALGGDVRFAAQQMVGdradga------ 255 Acidobacteria bact...
RMF88737  177 FGLRLGsVRLNEILageraspenaegilrYQIRSAVESAKralpie-ecdsfVAVGGDVRFAARHVGKtksaka------ 249 Planctomycetota ba...
TFG58849  169 HSMNIGtVRVEEMVkgsagkd-ylsrfllENISTRIEGLDsemdlk-riryfIAVGGDARFVAGLIGEpvnewy------ 240 Spirochaetales bac...
Feature 1                                                                            
6PC0_A    235 gyeidaHKNLAFIEKIVMLKEDQLRllgv-neeRLDSIRSGALILSVVLEHLktSLMITSGvGVREGVFLS 304 Helicobacter pylori G27
6PC1_A    235 gyeidaHKNLAFIEKIVMLKEDQLRllgv-neeRLDSIRSGALILSVVLEHLktSLMITSGvGVREGVFLS 304 Helicobacter pylori G27
OGV18428  239 mrfidiANFDDLYLQISEMKTDEIAgklgisdtLAQSIEPCCAILYHFFHASnaEKIIIPDiSTRDAIVSD 309 Lentisphaerae bacterium GWF...
OGV53303  241 iltvsrKNLETMHSSVAGVPSEKLAetyrlsdmIAQSLEPCCDILEHFIQITdaQKLVVPMiTTRDALIDE 311 Lentisphaerae bacterium GWF...
OGW72296  238 frtlekKAFVSFVNQIGKLTPDEVStqyglsyaEAETLYPALLVYANFLAETkaEQIVVPGtSIRDGLLSE 308 Omnitrophica bacterium GWA2...
OHD53851  235 vyrinsLRFKSLCKEIENLTVEEINkkyslnenVAGTTLMALLMTAKFFALTdaKDILFPN-ISMSGAILE 304 Spirochaetes bacterium GWF1...
OIO95075  244 fheidrETFSEFCTQTSRLTRENLVakynvsylEAETLVPALLAYSAFLKETpaSSVIVPNaSLRRGLLLE 314 Armatimonadetes bacterium C...
PYQ06042  256 pailgrEPFVAFCDQVTSWDVEQLVeqyhlpqaEAETLVPALVAYRELLQETaaQEVIVPDvSLRAGLLLD 326 Acidobacteria bacterium
RMF88737  250 -pvvahSDFRKLLQKLSGMTPEKISsrfglpmeEAETLFPALLAYDIMLTEVaaDEMIVSDvSMRDGLLLE 319 Planctomycetota bacterium
TFG58849  241 -stvkkTDFEKFVKEIKNLSVDECVsrlnipydEAEGLVPSLLIYLNFMNGTsaDHLIIPNvSIRDGIIIS 310 Spirochaetales bacterium

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