3G5O,3OEI,3DBO


Conserved Protein Domain Family
phd_fam

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TIGR01552: phd_fam 
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prevent-host-death family protein
This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other]
Statistics
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PSSM-Id: 273688
Aligned: 17 rows
Threshold Bit Score: 48.8191
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3G5O_A        10 ILPISTIKGKLNEFVDAVSSTQdQITITKNGApAAVLVGADEWES--LQETLYWL 62  Mycobacterium tuberculosis H37Rv
BAB73881       3 KVTLTELSNNIEHLLDEVVETGiPIEINKNGK-LFKIVPVEKTDK--LKNLIFKP 54  Nostoc sp. PCC 7120
CAD14574       3 SWQMQAAKARFSDVVKRAADDG-PQEITVHGRpVAVVISRALFDR--LSGSGESL 54  Ralstonia solanacearum GMI1000
BAB75167       3 SLEIPEGQAEFAELLRRVRDGE-EVIISQAGTpIARIVPIAEQKL--PRIPGLDR 54  Nostoc sp. PCC 7120
CAC01461       4 EIPVTQARAELADLINRVVYGGeRVVVTRHGKpLVALVSAADLAR--LEELRESP 56  Streptomyces coelicolor A3(2)
WP_001961623   3 TLTANDAKRNFGELLLSAQR-E-PVIISKNSKnTVVVMSIKDFEE--LEAMKLDY 53  Vibrio cholerae
WP_010915749   4 RFTLTDLGNKSGEVVEAAYRG--PVEITKRGTrKFVLLTAEHFDR--LSERNAQR 54  Mesorhizobium loti
WP_003535711   4 AVSAADANRKFSLILRSVREGH-SYVVTSHGRpVARIVPAAKSDN--AVSGARTA 55  Sinorhizobium meliloti
WP_004079961   8 FYSLADAKARFSQVVEEAKTKD--VVVTKNGVpAVAVIDYEKYKK--LMEFMDEI 58  Thermotoga
3DBO_A        10 EVASRELRNDTAGVLRRVRAGE-DVTITVSGRpVAVLTPVRPRRRrwLSKTEFLS 63  Mycobacterium tuberculosis H37Rv
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