4LJZ


Conserved Protein Domain Family
RpoD

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COG0568: RpoD 
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Statistics
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PSSM-Id: 440334
Aligned: 833 rows
Threshold Bit Score: 198.739
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4LJZ_F       251 QKLQQIEEETGLTIEQVKDINRRMS-IGeakARRAKKEMVEANLRLVISIAKKYTN-RGLQFLDLIQEGNIGLMKAVDKF 328
AKU99734     144 AYLREIQRHPLLTPEETHELAVKFVeSQ---DPQVAARLVTANLRLVVKIAYEYRR-AYKNIMDLVQEGNIGLMQAVKRY 219
YP_010803     79 LYLREISRFPMLKPEEEYELAKRVReTG---DGDAAFRLVSSHLRLVVKIAMDFQRrWMQNVLDLIQEGNVGLMRAVNKF 155
WP_122030679  23 IYLAEVARLPLLEENEERDLAMRMR-NG---DHGARERLIVSHLRLVVSMAREYGE-VGLDLIDLIQEGNLGLIEAVDRF 97 
WP_082175204  36 TWLAEVRRHPLLSREEEAALARHFReRG---DPKAQARLVASNLRLVVKLAREHHR-PPLLLMDLIQEGNLGLVIAVERF 111
WP_043812268  67 IYLQEIKKFKPLEQDEEFDLARRYRdEK---EEQAAFILITSNLRLVVKIAMDFQRrWMKNVLDLIQEGNVGLMKAVQKF 143
WP_047860051  85 AYMNEVQRHPLLTREEEVALARRLRdTG---DVQAAYRLVAANLRLVVKLAHEYHR-NPLSLLDLVQEGNIGLMQAVKKY 160
APR84962     162 AYLREVQRHPLLSPDDEKRLTEHYVkTQ---DVRTAARLVTSNLRLVVKLAYEYRR-AYKNIMDLIQEGNIGLMQAVKRY 237
WP_013247956  67 QYLTEIRRYPYLSKEEELRLFEEYQlRG---SRDAAMKLILANLRVSVSIASEYLH-TGADHMDLIQEGNVGLLQAIKKF 142
WP_082363365 168 AYLREVQRYALLTPTEEKELTVKYAqTG---DVKIAARLVTANLRLVVKLAYEYRR-AYKNIMDLIQEGNIGLMQAVKRF 243
4LJZ_F       329 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIEtiNK----LNRISRQMLQEmgREPTPEELAERMLMPEDKIR 404
AKU99734     220 DPYRGVKLSSYAAWWIRAYILRFILNNWRLVKLGTTQAQ--RKlffnLRKKRNELQAm-gIDPTNAEIAKQLNVPESDVA 296
YP_010803    156 DPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQ--RKlfynLNKERQKLILq-gYDPDAATLSERLNVTKEQVV 232
WP_122030679  98 DPERGVRLSTYARWWIRQAMGAAIERQAQMIRIPVHLFRaiVR----FHRLRASFGGSevQE--WGDLLLAPGMTLDRVQ 171
WP_082175204 112 EPERGVRLCTYAAWWIRAYLLRFIMENWRLVKLGTTDVQ--RKlffrMRQEEGRLLAa-gQEASPRLLAARLGVAEEDVV 188
WP_043812268 144 DPDKGIKFSYYASFWIKAYILKFIMDNWRMVKIGTTQAQ--RKlfynLGKERQRLQAq-gFDPTTSTLSKNLQVSEADIV 220
WP_047860051 161 DPERGVKLSSYAAWWIRAYILRYIMDNWKMVKLGTTEAQ--RKlffkLRQEQDKLMAq-gFEVTPKLLAERLNVTEQDVV 237
APR84962     238 DPYRGVKLSSYAAWWIRAYILRFILNNSRLVKLGTTQAQ--RKlffnLNKEKAKLSAm-gIEPTAAEIAKRLDVEEKEVV 314
WP_013247956 143 DPTKNVRFYAYAAWWARAYILRYLLNTYRLIKVGTTQDQ--RKlfynLKKEKAKLERe-gFAPDSKLLADRLNVRERDVI 219
WP_082363365 244 DPYRGVKLSSYSAWWIRAYILRFILNNWRLVKLGTTQAQ--RKlffnLNKEKAKLTAm-gIDPTPTEIAKRLDVEEHEVI 320
4LJZ_F       405 KVL-KIAKEPISMETPIGDDED--SHLGDFIEDTTLeLPLDSATT----ESLRAATHDVLAGL-TAR--EAKVLRMRFGI 474
AKU99734     297 EMDvRLAQSEKSLDAPVGDADGraIAKVDMIPSVGA-GPEAAMADeelqALVKDKLAEFRKTL-TGKdkDLAIFDLRLVS 374
YP_010803    233 EMEqRLDASDVSLDIPVGDEGGg-ASRMDFLPALGP-GIEDALSNheiaSMVQNRLQSIIPKL-SDK--EVDILQNRLLS 307
WP_122030679 172 QVE-RTVADVISLDSPLADDEGl-ETLDELVADETLpGPEKAALQ----ALFHDELIAVVNRL-PAR--DAQILRWRYGL 242
WP_082175204 189 EMDqRLRQDELRLDAATPDDDSgrPAPARALPSGEP-DVDEELGRrelsRWFHEKVRDFAHALhDER--ERYILEHRLLA 265
WP_043812268 221 EMGqRLGQHDVSLDMKIGDDSSf--TPMDFIPALEA-GIEEQMAAdeisVLIHDNIDAIRDGL-NEK--ELDILEQRLLA 294
WP_047860051 238 EMDqRLGHDEMSLDAPVGGDDSsaTRMDRFMPSSSV-GAEERLGNeqlkALFREKLQEFARSL-EGK--ERYIFENRLIS 313
APR84962     315 DMDrRLSSGEASLDAPAGDAEGraVSRVEMMPSALS-GPDVMIEAsemgNLVRERLQRFRETL-KGK--DVVIFDKRMAA 390
WP_013247956 220 EMDqRLGSWELSLDQPIGQENDg--TLMDILPAHEQ-PADERLADtqlkALFRRKLAEFTKTL-DER--EEDILRNRILS 293
WP_082363365 321 DMDrRLSSGESSLDAPAGDAEGrtISRVELIPGPSE-SPETYFETqevgHLVHQRLAEFRKTL-TGK--EVDIFEKRLTA 396
4LJZ_F       475 dmNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVlRSf--L-D 521
AKU99734     375 --DDPLTLQDLGDRFGISRERVRQLEQRLLARLRDYLKREM-GDa----T 417
YP_010803    308 --EEPVTLREIGEKYDITRERVRQIEARLLQKIRDHLFKEI-KDf----S 350
WP_122030679 243 egGEPWTLAEVGEALGVSRERARQLEERALKRLKEAWGEKAlQFyrqLiA 292
WP_082175204 266 --EEPETLQTIGEHFRVSRERARQVEAGLIASMREYLHEHM-PDf----T 308
WP_043812268 295 --DSPITLREIGDKYGITRERVRQIEARLLQKIKAQMSSTI-QDf----S 337
WP_047860051 314 --DEPLTLQDIGDKYGVSRERARQIEAALINRMREYMREHI-PDf----D 356
APR84962     391 --EDPLTLQELGDEFGISRERVRQLEARLTLKLRNYLKEEL-GDa----V 433
WP_013247956 294 --ETPLTLEDMGAKYGITKERTRQLEARIIKRLRDYIKKDV-KDf----D 336
WP_082363365 397 --EDPMTLQELGNAFGISRERVRQLEARLTQRLREYLREEL-GDa----V 439
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