Conserved Protein Domain Family
NodN

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cd03450: NodN 
NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Statistics
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PSSM-Id: 239534
Aligned: 47 rows
Threshold Bit Score: 148.866
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputative
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on the active sites of (R)-hydratase and the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       #    # #  #               #  ##                 
NP_102798     8 TPPTYEQLRTMSGQELGVSEWTTVDQDRINQFAECTGDHQWIHVDPERARRqsPFRTTIAHGYLTLSIIGALALGMgivp 87  Mesorhizobium lo...
NP_711080     5 VLSSFAELAAYAGKEIGVSDYHTVTQEQVNKFADATLDHQWIHTDPDKAAKesPFGGTIAHGYLTLSMAPYLLSQIle-l 83  Leptospira inter...
NP_770100     3 IFSDFSEIKSAVGTEIGVSDWVEVTQDRINQFAEATCDQQWIHVDQERARKesPGGTTIAHGLLSLALAPLFIRSVmg-l 81  Bradyrhizobium j...
NP_813414     5 IINSYEEFEKLVGQQIGVSDYVELSQERINLFADATLDHQWIHVDTERAKVdsPYHSTIAHGYLTLSMLPYLWNQIiq-v 83  Bacteroides thet...
NP_888803     5 SFDSIAALKAFAGQPAAVGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAesPFGTTIAHGLLTLSLITGWYHQLfe-f 83  Bordetella bronc...
ZP_00569909   3 TIDGIDELKRVQGQELGTSSWLTVTQDQINTFAAATGDWQWIHTDVEKAKDg-PFKTTIAHGYLTLSLLPVMVAEIaq-v 80  Frankia sp. EAN1pec
ZP_00380628   3 TLNGIDEITSLVGTELGSSEWTTIDQDAINTFADVTDDHQWIHIDEERAAEg-PYGATIVHGFFTLSLIPKFSSEIft-i 80  Brevibacterium l...
ZP_00381320   6 RPTSIADLEALVGQELGPTGWHVLVQDDINSFADLTNDHQWIHVDEERAAAg-PFAGTIGHGLFTLSLGPAFMEELma-f 83  Brevibacterium l...
ZP_00639729   3 TVINRNDITNYIGFQAEPTGWYQITQDQINQFADCTLDHQFIHVDEEKAKAt-SFGSTIAHGFLSLSMLSHFAEEFsvii 81  Shewanella frigi...
ZP_01015505   3 EIRTLHDLRDHVGATLMPSDWVEVTQETIDRFAELTLDDNWYHVDIERAARelPDGKTIAHGLYTLSLVPGLSKQIfr-m 81  Rhodobacterales ...
Feature 1                                                                              
NP_102798    88 eNTQAAFNYGFDKVRFLAPVKAGARIRLRTVLLSMEdrgpgqylmkAANTVEIEGEEKPALTAETLVMLYE 158 Mesorhizobium loti MAFF30...
NP_711080    84 kNIKMGINYGMEKLRFLEPVKVGSKLRLKAELIELKdlrgt-armtLKMTFETEGSTKAAAVGEVIYLYQF 153 Leptospira interrogans se...
NP_770100    82 kGLRNTLNYGADRIRYLAPVPAGSKLRGRVTVAEAEdvppdglrvnYHLVIEIEGGKKPACVAELIALHYR 152 Bradyrhizobium japonicum ...
NP_813414    84 nNLKMMINYGMDKMKFGQAVLSGQSVRLVTTLHSLTnlrg---vakAEIKFAIEIKDQPKKALEGIAVFLY 151 Bacteroides thetaiotaomic...
NP_888803    84 pGRKLALNYGFDKVRFPAPVPSGSALVGSFRLARVDdlgpdearclWEVDVRVAGAERPAMVAEWLMQLRY 154 Bordetella bronchiseptica...
ZP_00569909  81 tGITMALNYGLNKVRFPQPVPVGSRVRGTLRNISVEeipgg-aqavNQLTIELEGAAKPACVAEFVARYLV 150 Frankia sp. EAN1pec
ZP_00380628  81 eGVSIRVNYGLNKVRFAQPVPVGSRLRGTVSVNEVIpgdkg-tqviLKHVIEIEGQERPACIAEVVTLLVE 150 Brevibacterium linens BL2
ZP_00381320  84 dGFAHSLNYGYGKVRFPNPRPVGSRVRMHATVTEVErkktgsaqitTTQVFEAEGIDKPVCVAESIGFFTE 154 Brevibacterium linens BL2
ZP_00639729  82 dGFYMGLNAGFDKVRFLQPVTVNSRIRAHAKTLSIEekkpgqfrlsTEVTIEIEGVDTPALVAEWISVQMV 152 Shewanella frigidimarina ...
ZP_01015505  82 sAHGRAFNYGYDKVRYPAPVPVGSRLRLHMTVDKVNeerg---glmICRTFKMELEGFEAPALVAVARTLA 149 Rhodobacterales bacterium...

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