Conserved Protein Domain Family
RloC

?
COG4694: RloC 
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis]
Statistics
?
PSSM-Id: 443729
Aligned: 95 rows
Threshold Bit Score: 110.596
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_082175856   1 MITEVD-LSEVPCFASGAKLTK-LNKVNFVFGPNGTGKTSITRILSAGPDDSR-----------------------ItrD 55 
YP_234509      1 ----------------masiqseyhrfltylsqrevhddvrrlallvlnhleplaavgaarrgrstrlaplaiahlaemp 64 
WP_011734061  83 lllsslygvegvnalvekqtiefspKLTIIYGVNGSGKSGYIRLLKQAFHSRTtepiipnihla-sghkatkaifeF--K 159
WP_081439752  86 tltslsdvVGVNALVEGGVIEPhA-GLTILFGENGTGKTGYSRIFKALAASRtadvilgdiea--aspqpqsalvgY--T 160
WP_049639531  73 RILSIGdIEGIDALAPRSPLPF-SSNLSVVYGHNGSGKSGYARILKKICGKPNaadllpnvfkg--npekrqctvvA--N 147
WP_068442024  70 rlcsisetsginkLAPKTPLEFgESDIVVVYGRNGSGKSGYVRLLKHVCGARDkildklynnvfaqekktqeakitFl-K 148
WP_079559197  69 fLSKLIhKKGVNALSENQTIKF-NDNVTILHGLNGAGKSGYFKIINEIVGGNQikeilpniyk----dnpseidveI--S 141
WP_089416495  79 iirlakvevehfrgfcdkhvfefknPYTFVYGPNGTGKSSLCEALEYGLLASIheadskripvsdyirna---------- 148
WP_114564019   2 SFTKLEnIEGVNALTENQVIDF-SPNLTIIYGANGSGKSGYVRLLKKVFYSKTpeeiiqnihik-sehkpvsanftFh-S 78 
WP_069797995  80 ELISLSdVSGVNRLAKNQTINF-SPNLTVVFGENGTGKTGYGRILKTLGFSYDtynnilsdisk--tavpqsaiinF--K 154
WP_082175856  56 AE-----------------PSNREI----LILNSDYIENTFQDt-------------VDGIFFLGKQSIAN-ENEI-QDN 99 
YP_234509     65 vayeenpreadavselgrlhqlqvgpfrgfmrpeafdlshditlvygangtgkssffealevamlgsiseaqvkrldqrq 144
WP_011734061 160 TDatpytln---yptqkdkTEFKQF----SIFDNKCVSIHL----------------AKNRPEFRPAGLNF-FADL-TDA 214
WP_081439752 161 LGtetktyt---wtgqqgvAPFTRM----SIFDSPSVSFHVD---------------DDLEYVYVPAALAL-FNHV-IAG 216
WP_049639531 148 VNgesktfiw--qandkpiNELMSV----DVYDSQTGIFYID---------------KEQEVSYVPNEVAL-FETL-VII 204
WP_068442024 149 NNmlktyew----tgqgscEEISSV----NIFDDSFGQVFIE---------------GEDEVSYEPPMLSF-FSLL-TEI 203
WP_079559197 142 YRecvnenkiswdgktrslEKLNKC----KVFDASYLNGLLETr-------------QNDTTLIQPLSLNI-FTYL-IDL 202
WP_089416495 149 ---isrksvnpilygdtakKQGIEVksdpRNFEFCFIEKNRIDgfarvaantpsaqqARLAALFGLEEFNAfATQFnESL 225
WP_114564019  79 ADsgislky----pdnsnnSEFEQF----AVFDNGSVKKHLD---------------HKNEFEFRPAGLSF-FADF-TEA 133
WP_069797995 155 ANsiaktfn---wngkntiQELENI----SVFNNNCVSISL----------------NDRQLIVTPIGFHL-FNLI-TTE 209
WP_082175856 100 KRLEEQLKeqidsl---------ehdikVLK-----STQsdakkkvlraiwssrdsvptqlssCLQGFNGSKKKLFAKLN 165
YP_234509    145 ycnnarlrrhippvlssrdadgdrvvqpdeakyrfcfieknrlddfariaartpgdqrqliatlfgmeqfaefvrgfnps 224
WP_011734061 215 FRKLEEKIekevstkia---pkdygalfDGE-----SAIrefmvnlsakt---kvadlkkmipFTEADKAKRTELESQKV 283
WP_081439752 217 IKSVQAHIdqavedlrs--gstgllsrfPRT-----AAVyplietlgast---dlehlrsladSDPDVETRIGDLRRTVA 286
WP_049639531 205 FQRLQQKLqlerdsiktk-lptrptqygDSKy---iSAIydrlkhdtn------iatiesyfdFTEEDTKNLALSEERLS 274
WP_068442024 204 CKKVEIKLeeeeetlkpk-ipklpkeikGSEgakwleeisav----------ttpeeiesyssFTKEDEEKLQEIQQRLM 272
WP_079559197 203 VDKFKNQLitnsdkkrlqkpsidltnisERN-----QNVflnhnltesk-----kieitklfdFSNERAKDLDDLNKDLS 272
WP_089416495 226 EPYLDCVGkkgk------------dlanRAKgiaghKAIleg------------------lseKAKAAETRGASLLAKYM 275
WP_114564019 134 IKRVEVKLnseiaskqt---snefdvwfDGE-----SEIkalvqgltaqt---nivdlkkhtpFSEKDKTEKAAIEKKYD 202
WP_069797995 210 LNKLENLVnieiakypt---tlnwtnllNNG-----TQQqvfistlsnns---teerlnqlssFTNIQEKELQDSESELT 278
WP_082175856 166 ETRQQslhsinthvttLAELAAEEKGILTSTLEtvtr----vstAPQLPLELKD-LPDLL-------------------- 220
YP_234509    225 ldqdlmlvgaqasqltlrrlqlssseqgiaaypqriagiekqecllaqrmspgstylscvewllgtpqkqgrlpyvqaql 304
WP_011734061 284 QLQ-------------ALKKDKEIGILTNNKKL-----------LETLKTSIAD-NNKQLsaeallaiq-------tais 331
WP_081439752 287 ALEAD-------------TISAEIKLQQ----R-----------VERVLTQASN-AATVMadfnveayg-------rerd 330
WP_049639531 275 ESPSEl----------ATKKHRRVAQ------------------MSQLLNQVKT-AVMSVseaavklln-------aled 318
WP_068442024 273 ----------------EQSPADKAEKLKSKSTN-----------LDNLIQETQK-HLDELsyenchriv-------evkr 317
WP_079559197 273 ILK-------------QINIQDRIKLLSDNKNSieklkewltknFTTLSDNITE-AKKILed------------------ 320
WP_089416495 276 ECKD------------LEEIKATLTGPEGSGGRrkann-teiglLQNLKTATDPgTDSILad------------------ 324
WP_114564019 203 EVA-------------LASKNKEKDIIK----------------LEGIKKSVSD-NKKTIefintyfastyltrvqtsit 252
WP_069797995 279 NLNKT-------------ILQRDIQTITASISE-----------LTTIINKIQN-IQKSLnqdewnils-------erni 326
WP_082175856 221 -----RTP-LIPAADSPLSD--LISQVQNSDW---VRDGKEIMEkh--------lDALRDRCPFCQQKT----------- 270
YP_234509    305 navsptvhgisrdrllalladsyraqdlwkeasgqlsarasevsyaklyeallalaegaTTCPACGTglatva-----qn 379
WP_011734061 332 dcitkDEI-ANNEGLENVKTd-tFEKVESAEWkafIVAANKFAIqqedn--ggpyPKDIDTCLFCRQPLsa--------- 398
WP_081439752 331 tlhglEED-YRAFRAALFEAa-dLPAEPDDTWstfVEAGEAYQahli-----avgAHDADRCLYCRQPLne--------- 394
WP_049639531 319 eavqkRNM-ARQAAEAIEAEt-sFDGFGDDLWkamWQAARKYSLqnaypdaqfpnIEQGAKCVLCEQDLgs--------- 387
WP_068442024 318 kanskKTA-AKTAAKKAFNDs-kLEGIGSDVWkemWSAAQKYSNeyacrdknfpfIEDGSVCVLCHQPLst--------- 386
WP_079559197 321 ---kkEKQlASNKAKEQFEVlkNVPLSNSNEWkefIIAGQSYSEi---------lTGKESICPYCLQELqs--------- 379
WP_089416495 325 ----aDRLiRLIKEKAELEEr-------lNQYk-nQLSLRDLYTail-----gnrENFGNECPACASELyrdgrlvvpvd 387
WP_114564019 253 dcldkEAA-AKAGGIENFKTn-kVQNIGTTEWknfIVAADKFAKqqkgd--etvyPKSNDNCLLCHQPLse--------- 319
WP_069797995 327 kinelENQ-ANKGIKEIAETh-gIEFYQSIEFdnfIKSAEAYIKiidk----gnyPENGNNCVYCLQPLqn--------- 391
WP_082175856 271 ----PPHFGESLTKLWDRS--YDAAVARLHSYLAALDSSIKQVSTFKGE---------------ID------KHQLEDVS 323
YP_234509    380 pftkARAGIEQLAQLATLQqrESNLRAEFSDAVRMLWEEMHRVVSVAatv-----------------------------c 430
WP_011734061 399 ---eAKKLIESYWVFIKSQ--AEHNATAAN---GVLKATKAVYDGLKfdllpdd-----------avlttwlLENHPEQL 459
WP_081439752 395 ---aARSLIGKYSEYMEDK--ITTDIAASK---ARLHALTEPVTSIQvndvstf------------adeyadTEDKPHFH 454
WP_049639531 388 ---eAKTRLAKFENYVIGE--LESSATAAE---SMNQKALDNLP--------------------TkpnpneleTALQAAQ 439
WP_068442024 387 ---eAKERFISFEEYIKGE--TQKRAEEAE---NEKEQYINGLSEIPNPdtl------------------ktkANASGIE 440
WP_079559197 380 --dnSVKILKAYGSFLKDN--SERELKKVL---LNIQAKLKEIEALSfdyqfseg---tiqilkeN------TTEDKSIY 443
WP_089416495 388 pygnAEENLKHFDAALRAEgrIKEIRETLALGWGDLFSKIAKLPASAtavgfvgasevssfsaeaF-------------- 453
WP_114564019 320 ---eAENLINNYWVFIKSV--VEQNATQSQ---QELNEIKAGFEKLTfdlfpid-----------niltvwlTENYPNFL 380
WP_069797995 392 ---pATELLKNYRKLLNDE--TQENLSNLK---QQKLDAINLISQIDtnftlsq------------atfgfdnENKIIIQ 451
WP_082175856 324 E-NANSp---LVVFI-QESLAEAHR--HLKTKLEKHS---QSIEAPeqwdidnfnTELRKLTGQLNALIDEHNSKVNDQ- 392
YP_234509    431 lqDLSAh---SLPLLpLAFGGSWLAewVEGEQLAwk-----------------glLRIAEIIEGLDTQAREANAQRIAL- 489
WP_011734061 460 K-GIKA----SLLIQ-KALAADISS--DIETKVINKR---AAVVIEt---------------TPIDTISTSIDTAITKLq 513
WP_081439752 455 V-ELDR----TLSTI-AELSEQLLAasAVNAALTEHA---GTDAIA------------------LGSALETAKRALGELr 507
WP_049639531 440 L-DLEK----WRPIF-TEIWAEIEK--VVKNGKDKERttrLHYDLP------------KDIFEEIERNITDINSEVEQHk 499
WP_068442024 441 GqEIIDpmieTFTTL-QQIKE------KLQSSDDHSDe--VIIAISq----------nPSWLEEMRNISTQYKSLASKYt 501
WP_079559197 444 E-IVLD----IIKYF-KDVKSKIIE--LIKNEDSHSTi--SVLDISal-------------tAELNFRVENLQSQIEKYs 500
WP_089416495 454 --DAKD----------TAGIETFLW--AVQAKRELLQ-------------------SLKDATTIHNGKVEQSKAVIKKL- 499
WP_114564019 381 T-SVKE----NLAAQ-KVLTSNIVA--DITGKTANNR------------------VEIQTSVDDHDTIISAINESISTLk 434
WP_069797995 452 PsELIE----FQNTL-VKLKQVYISd-TVTNE--------TPFNLDyak----yiKFCTDKKTELSASLIQKNDLLSNIs 513
WP_082175856 393 --DRLQREFKERFWSI-YAhHTCDsa--------fETFESIVEGENGTSA-QITTLTAqlssITKQLEETTE---RINAA 457
YP_234509    490 --ADERERLDQNRLDVeRL-RTLRaa-------adQDLAAAHQTVAQFDEtNLELIQA----ATQEVPVVAKh-hRIKAA 554
WP_011734061 514 --KNDPSEEIKKLQT--TI-TFLNh---------kEKLEQHISDIESYID-CLIWADTa---AKTAKDNISRl--QLTKK 573
WP_081439752 508 tqAATRADTLAEKKK--EL-VELEa---------aAELTKSWTLIESHVR-DAKQADR----LMLLAKPMPGllrAVTGL 570
WP_049639531 500 --KDAESFDKGSLQK--QI-MDLKa---------kKWASGYIQTIKDEIA-ELQRKHE----IDEWLKSVNPr--PVSLK 558
WP_068442024 502 --EDYKQDNRGKLKQ--IS-QNLMa---------kRWMTNYKKEIYEETS-RLQNLQQ----IKKAKRTTSSt--ALSRK 560
WP_079559197 501 keDTEKKEKIKLIEQ--KL-SLLKe---------nKSISLQKNNIEKWFE-LTSEETA----LKKKANKINTr--QLSSL 561
WP_089416495 500 --EDDNLAIDKDLEEIvAI-STIVaanskseteatQAIDKFNRENEELIR-EAEAEKS----------DVERn-lSYSQA 564
WP_114564019 435 --NDSLGAELTKLLN--TK-TYLAh---------kEKFNIHFEKFTTYIQ-NQQWILK----ANTISWVSQKr--TITTW 493
WP_069797995 514 -------TKEIQLKA--KI-AELKd---------rKLLSTKINEIRTCIL-NHKTIAT----LNSNYNSFNTn--SISRK 567
WP_082175856 458 ERGRMDV---HSAIKHINRALSG-IGITsFEL-GATTDDfnsthpaeinkRDAYVLLRrne-----------ngRQERAD 521
YP_234509    555 YDGFLPVi--QEYVASLPGVLLQgMGEQtRNLyNAFNRGds-------pgDLLHALWLpvaengridvefgsepGTRYDA 625
WP_011734061 574 AKELSGKyfnDAYAASFNQECEA-LD-GhFEI-D-ISHTga-------sgASYKQLFL----------------KGKNQP 626
WP_081439752 571 AKTASDQminESFDALFSEECAA-LRAPaLHV-EFVgr----------qgRAQRRKILs----------------GKHKP 622
WP_049639531 559 AGQVSEIavtDAFVGRFKAELKA-LGANrVSV-ELVKTRie-------lgRVKHKIQLqgl----------ntqHSRSKA 619
WP_068442024 561 KGELAEThitDAFIQRFNNELNA-FGAShLKV-KLVKSKvs-------kgSVLHTIKLdg--------------vTQNNI 617
WP_079559197 562 SKTANDDlltETLKIKFNEELAN-IGYPnLDV-RIENAGtk-------kgVSSTKLVL----------------SRNNDI 616
WP_089416495 565 YATFRGKl--LAYNAGLPLALAAdLNEKtLKFyNEINKNdh-------psDRLKSLRLptavgek--ieiefenGSKCDA 633
WP_114564019 494 EKNLSGKyfnQKYVDIFNQECAH-LNGS-FGI-E-VSHTgs-------sgTSFRQLTL-----------------KGKNP 545
WP_069797995 568 TTEAREEliqQNFNTIFKKELKS-FKKGhISI-D-LNFGtt-------rgNSKISHRI-----------------NSHSL 620
WP_082175856 522 VKRLSDGERNLICFLYFFHQFHEDTAntnKKFTVVIDDPINAMDGLSSFITSGFIRELirsilqlkktpeHKFVDQLIIL 601
YP_234509    626 LIVLSEGHIKCLGLAILLAKNI--EQ---RCPVVIFDDVVNAIDDEHRDGIWRTFFEDg-----------VLDGKQVILT 689
WP_011734061 627 SQILSEGEQKVISLADFLAEINLSEI----TRGIIFDDPVTSLDDERKCLIGNRIVNE------------T-AKKQIVVF 689
WP_081439752 623 SKVLSEGEQKVLAIADFLAEARLAGI----TAPVIFDDPVSSLDHRRINEVAQRVASL------------A-DTTQVIVF 685
WP_049639531 620 ISVLSEGEQRIVSMAAFLADVTSKPN----SAPFIFDDPISSLDQTYEEYTAKRLVEL------------S-ADRQVIVF 682
WP_068442024 618 GEILSEGEKRIVSISAFLADVTIGNN----SGPFVFDDPISSLDQCYEEAVVQRLCAL------------S-SDRQVIIF 680
WP_079559197 617 KAILSEGEQKAVALALFVAEVRMQKQ----TNPIILDDPVSSLDHKIAGKFAERLLNI---------------DNQVVIF 677
WP_089416495 634 LLVLSEGHIRCLGLAILLAKITRD-----RLPFLIFDDVVNSIDDEHRGAIIDLILNPe-----------EVGNRQLIVT 697
WP_114564019 546 AAILSEGEQKVIALADFMAEMQLSDV----NRGVIFDDPVTSLDEGRKKDIAHRLIKE------------S-GRKQVIVF 608
WP_069797995 621 LEILSEGEQKAIALSEFLTELQLDNI----KAPVIFDDPVNSLDHNIIDDVAKRLIKL------------S-SERQVVVF 683
WP_082175856 602 THSTRFHI 609
YP_234509    690 SHAEEFLH 697
WP_011734061 690 THDLVFVS 697
WP_081439752 686 THDIFFAS 693
WP_049639531 683 THRLSLLG 690
WP_068442024 681 THRLSFLG 688
WP_079559197 678 NHNRLFLd 685
WP_089416495 698 THGEDFVK 705
WP_114564019 609 THDLIFVS 616
WP_069797995 684 THSVLLFN 691
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap