Conserved Protein Domain Family
Cupredoxin_like_1

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cd04210: Cupredoxin_like_1 
Uncharacterized Cupredoxin-like subfamily
Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins because they have an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. Majority of family members contain multiple cupredoxin domain repeats; ceruloplasmin and coagulation factors V/VIII have six repeats; Laccase, ascorbate oxidase, and spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase and the periplasmic domain of cytochrome c oxidase subunit II.
Statistics
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PSSM-Id: 259872
Aligned: 6 rows
Threshold Bit Score: 192.68
Created: 30-Jan-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative Type 1
Feature 1: putative Type 1 (T1) Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C H MClick to see conserved feature residue pattern help
Evidence:
  • Comment:predicted based on homologous protein.
  • Comment:Type 1 (T1) copper sites are characterized by their conserved H...C...H...M copper ligands.
  • Comment:Some members bind copper at the T1 site with three amino acid residues (HCH), instead of four (HCHM).
  • Citation:PMID 2716059

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                #                                       
YP_001516382  42 IDVDIALGNeaGALRFFPDNLQFEpGRRYNLHLSNSSGQKHYFTAKDFADGIWSQKvda------gnVEIKGAIHELELR 115 Acaryochloris m...
YP_172280     42 QSISIDLGNaaGELRFFPSQLRLKaGQPYELALHNPSPLKHYFTAKDFSDAIWTRKvda------ggVEVKGSIRELELR 115 Synechococcus e...
AAF63032      40 QEMQIHLGTtsGALRFVPDQLEFVaGQRYKLLLDNPSNQKHYFTAKDFADTSWTQKvea------gkVEVKGAIHELELK 113 Synechococcus s...
BAB72977      77 SEITVSLGNsaNELKFEPNNLELVaGKRYLLHLNNPSQLKHYFTAKDFADGIWTQKvea------gkVEIKGAIHELELK 150 Nostoc sp. PCC ...
YP_477240     19 QEKVIELGTadNQLVFVPKELSFRnGSLYRLRLSNPSQLKHYFSAKDFADAVWTRKldv------agVEIKGQIRELELK 92  Synechococcus s...
YP_129968     34 IELKVSLGNdkNAMRFFPDKLEFEtGKLYKLILHNEGKEKHYFSSEGLAQAVFTRKtqvvsadgkviAEIKGTVREIEVY 113 Photobacterium ...
Feature 1                             #    #    #      
YP_001516382 116 ANTEAEWVFVPl-RSGTYSLRCTVPGHTEAGMVGTIEV 152 Acaryochloris marina MBIC11017
YP_172280    116 PGSEAVWQFTPe-RPGQYDLRCRIAGHTDAGMTGQLIV 152 Synechococcus elongatus PCC 6301
AAF63032     114 PGAIAEWILIPq-KTGKFELHCSVPGHAAAGMVGTIQV 150 Synechococcus sp. PCC 7002
BAB72977     151 PGAEAEWVLVAi-KPGKYGLRCPIPGHTEAGMTGEIVI 187 Nostoc sp. PCC 7120
YP_477240     93 PGASVEWQFIPl-KSGVYALVCTIPGHAEAGMVGQITI 129 Synechococcus sp. JA-2-3B'a(2-13)
YP_129968    114 PGGTAEWWFVPvkATEIKDLKCTIKGHAEAGMTGLITI 151 Photobacterium profundum SS9

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